Thermacetogenium phaeum: Tph_c08910
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Entry
Tph_c08910 CDS
T02276
Symbol
ligA
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tpz
Thermacetogenium phaeum
Pathway
tpz03030
DNA replication
tpz03410
Base excision repair
tpz03420
Nucleotide excision repair
tpz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Tph_c08910 (ligA)
03410 Base excision repair
Tph_c08910 (ligA)
03420 Nucleotide excision repair
Tph_c08910 (ligA)
03430 Mismatch repair
Tph_c08910 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpz03032
]
Tph_c08910 (ligA)
03400 DNA repair and recombination proteins [BR:
tpz03400
]
Tph_c08910 (ligA)
Enzymes [BR:
tpz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Tph_c08910 (ligA)
DNA replication proteins [BR:
tpz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Tph_c08910 (ligA)
DNA repair and recombination proteins [BR:
tpz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Tph_c08910 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Tph_c08910 (ligA)
MMR (mismatch excision repair)
DNA ligase
Tph_c08910 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Tph_c08910 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
RNA_ligase
HHH_8
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AFV11121
UniProt:
K4LDN2
LinkDB
All DBs
Position
923338..925341
Genome browser
AA seq
667 aa
AA seq
DB search
MSLPEEARKRAEELRREIRKHDYHYYVLDNPLITDQEYDSLMRELVELERRYPELVTPDS
PTQRVGGAPLKQFRSVRHSTPLLSLGNAFDAGELRDFDRRVRQLVGEAVDYVVEPKIDGL
TVVLTYENGNFVLGATRGDGLTGEDITENLRTVRLLPLRLLGAPRRLVVRGEAFMPKKAF
ARLNEERDNRGEPPFANPRNAAAGSLRQLDPKVTAGRTLGFYAYQIIECEGREFTTQWEA
LSFLKEVGFSVQEQNKRCRDIEEVIAYCNSWIEKRHVLNYEIDGMVVKVNSLRLQKVLGN
TAKSPRWAIAFKFPAEQAVTQVKDIIVRVGRTGVLTPTAVLRPVVVAGVVVSRATLHNED
MIREKDVRIGDHVVIQRAGDVIPEVVRVLPERRTGVERVFRMPDRCPVCGGRVLRPEGEV
AARCTGIACPAQLKELVLHFVSREGMDVEGIGPALVAQLVDKGLIRDPADLYFLRKEDLV
NLERMGDKSADNLLRALEKSKKRGLAPLLFALGIRYVGTRAAEILAERFGSLDALAAAGE
EELTAIPEIGPKIAASVATFFKQEQTGRVIAKLKEAGVLMERQELPETNDLPLTGKTFVI
TGTLPSLTRKEAEDLIKKYGGRISSSVSKRTDYLVAGKEPGQKYDKARELGIPIIDEAAL
LRMLPAD
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgagcctaccggaggaggcccggaagcgggctgaagaactgcgacgggagatcaggaag
cacgattatcattattacgttctggacaaccctttgatcaccgaccaggaatacgattcc
ctgatgcgggagcttgttgagctggaaaggcggtatccggagctggttactccggattcc
cctactcaaagggtgggtggagcaccccttaagcagtttcgctcggtcaggcacagcacc
cccctgctcagcctggggaatgccttcgatgccggagagctgcgggacttcgatcgccgg
gtgcgtcagctggtgggggaggctgtggactatgttgtcgaacctaagatcgacggcctc
accgtagtactcacttacgagaacggcaattttgtcctgggggctacccgcggggacggg
ctgacgggggaggacatcacggaaaacttgcgaaccgtgaggttgttgcctttaaggctc
ttgggagcgccgcgccgcctggtcgtgcgcggggaggccttcatgccgaaaaaggctttt
gcccggctcaatgaggagcgggataacaggggggaaccgccctttgccaatccccgcaat
gctgctgccggttcgctgcgccagctcgatccgaaggtgacggcggggcgcaccctgggt
ttttatgcctatcaaatcatcgagtgtgaggggcgggagttcaccacccagtgggaggct
ctgagcttcctgaaagaagtgggtttttcggtgcaggagcaaaacaagcgctgccgggac
atcgaagaggttatcgcttactgcaacagctggatcgagaagaggcatgtcctcaattac
gagatcgacggaatggtggtcaaggtcaattctctacgcctccagaaggtcttgggaaac
accgccaagagcccgcgctgggcaatcgccttcaagtttcccgccgaacaggctgtaacg
caggtcaaggacattatcgtgcgggtaggaaggacgggggtgctgacccctactgcggtt
ctccggccggtagtggtggcgggggtggtcgtttcccgggcaaccctccataatgaggac
atgatacgggagaaggacgtccgcatcggtgatcatgtggtcatccagcgggccggcgat
gtgatccccgaggtggtgcgggtgcttccggagaggagaaccggagtagagagggttttt
cggatgccggaccgctgtcccgtctgtggtggcagagttttgcgcccggaaggggaggtt
gccgctcgctgtacggggatcgcctgccctgcccaattgaaggagctcgttctccacttc
gtttcccgggaagggatggatgtggaggggatcggccccgctctggtggcgcagctggtg
gacaaaggactgatcagagaccctgccgacctctacttcctccggaaggaagacctggtg
aatctggagcgcatgggggacaagtcggcggataaccttttgcgggccctggagaagagc
aaaaagaggggtctggccccgctcctctttgctctggggatccgctatgtaggcacgcgg
gcggcggaaatactggcggagaggttcggctctctggacgctctggccgccgccggtgaa
gaggagctgaccgccattcccgagatcgggccgaagatcgctgcgagcgttgccacattt
tttaaacaggaacagaccggacgggttatcgccaaactgaaggaagccggtgtcctgatg
gaacggcaggagctccccgaaaccaacgatctccctcttaccgggaagactttcgtgatt
accggtacccttcccagcctcacccggaaggaggcagaggatctgatcaagaaatacggt
gggaggatttcctccagcgtcagcaagaggaccgactacctcgtcgcgggtaaggagccc
ggtcagaagtacgacaaagcacgagagcttggcattcccatcatcgatgaagccgccctc
ctccggatgctgcctgccgattaa
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