Truepera radiovictrix: Trad_1596
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Entry
Trad_1596 CDS
T01254
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tra
Truepera radiovictrix
Pathway
tra03030
DNA replication
tra03410
Base excision repair
tra03420
Nucleotide excision repair
tra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Trad_1596
03410 Base excision repair
Trad_1596
03420 Nucleotide excision repair
Trad_1596
03430 Mismatch repair
Trad_1596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tra03032
]
Trad_1596
03400 DNA repair and recombination proteins [BR:
tra03400
]
Trad_1596
Enzymes [BR:
tra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Trad_1596
DNA replication proteins [BR:
tra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Trad_1596
DNA repair and recombination proteins [BR:
tra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Trad_1596
NER (nucleotide excision repair)
GGR (global genome repair) factors
Trad_1596
MMR (mismatch excision repair)
DNA ligase
Trad_1596
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Trad_1596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
PTCB-BRCT
HHH
DNA_ligase_ZBD
RNA_pol_A_CTD
Prot_ATP_ID_OB_C
protein_MS5
BRCT_2
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
ADI14715
UniProt:
D7CY76
LinkDB
All DBs
Position
complement(1713502..1715547)
Genome browser
AA seq
681 aa
AA seq
DB search
MSDLRALAARAAALRATLREANYRYYVLQDPELSDAEWDRLFHELKRLEETHPELRTPDS
PTQRVGAPPQASFAAVRHPHPMLSLDNAFDLAGLEEFEARLKRVLATDEEIAYLAELKID
GLSINLLYEGGVLVWAATRGDGVTGEDVTFNVLGVPGLPQRLPEALPGGGRVPEVLEVRG
ELYLSRAEFRRINEERAAAGEPPFKNPRNAASGTIRQLDPRVSAGRKLQVFFYGVAEPRA
LGVRTQSELLDWLAAAGFRTNPLRARARGIAALEPLIARWTALRSTLDYEADGVVVKVDE
LALHDELGSTARAPRWAVAYKFPAEEVETTLLGVSLGVGRTGKITPVAELEPRLIEGTEV
SRATLHNPGFIAALDLRVGDRVMVHKSGGIIPEVIRVLTEARTAELPPYVFPETCPACGE
ALIEDGANVRCVNLACPAQVLARLSHYASRGAMDIAGLSTKTLQKLLDKGLIRTIPDLYD
LTPEQLTPLEGFGERSAQNLVAAIARSKTQPLERLLVALGLPHVGARTAQLLARAFGSLE
ALQAADTADLAALPEVGETTARAVHDALQQPALRALIGELRARGVGGGAAAPRSDRLKGL
TFVLTGTLSEPRDRLKERLEALGARVASSVSKKTSFVVAGEDPGSKLDKARALGVPVLDE
AGLAALLAARLGEEALALESS
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaccttcgcgccctcgccgcgcgggccgcagcgctacgcgccacgctacgcgag
gcgaactaccgctactacgtgcttcaggacccggagctctccgacgccgagtgggaccgg
ctgtttcacgaacttaagcgcctcgaggagacccaccccgagctgcgcacccccgactcc
cccacgcagcgcgtcggcgcgccgccgcaggcgtcgttcgccgccgtgcgccacccgcac
ccgatgctgtcgctggacaacgccttcgacctcgccggcctcgaggagttcgaggcgcgc
cttaagcgcgtgctcgccaccgacgaggagatcgcttacctcgccgagctgaagatcgac
ggcctgtcgatcaacctcctttacgaggggggcgtgctcgtgtgggcggcgacgcggggt
gacggggtcacgggggaggacgtgacctttaacgtgctcggggtgccgggactgccgcag
cggttaccggaggcgctcccgggcggggggcgggtgccggaggtgctcgaggtgcgcggt
gagctctacttgtcgcgcgccgagttccggcgcatcaacgaagagcgcgctgcggcgggc
gagcccccctttaaaaacccccgtaacgccgcctccggtaccatccggcagctcgatcca
cgggtcagcgcggggcgcaagctgcaggtgtttttttatggcgtcgccgagccgcgcgcg
ttaggcgtgcgtacccagtcggagctgctcgactggctcgccgcggcggggtttcgcacc
aaccccttgcgcgcgcgcgcgcgcgggatcgccgcgttagaacccctcatcgcgcgttgg
acggcgctgcgcagcacgctcgactacgaagccgacggggtggtcgttaaagtcgacgag
ctcgctctgcacgacgagctcggcagcaccgcgcgcgcgccgcggtgggccgtggcctac
aagttccccgccgaggaggtcgagacgacccttttgggcgtcagcttgggggtcgggcgc
acgggcaagatcaccccagtggccgagctcgagccgcgccttatcgagggcaccgaggtc
agccgcgcgacgctgcacaacccggggtttatcgccgctctggacctgcgcgtcggcgac
cgggtgatggtgcacaagtcgggggggatcatccccgaggtcatccgggtgctcaccgaa
gcgcgcaccgccgagctgcccccgtacgtctttccggagacgtgcccggcgtgcggcgag
gcccttatcgaagacggcgccaacgtgcgctgcgtcaacctggcgtgccccgctcaggtg
ctggcccgcctcagccactacgcctcgcggggcgccatggacatcgccggcttgtcgacc
aagacgttgcaaaagcttctggacaaagggcttatccggacgatccccgacctctacgac
ctcacgcccgaacagctgacgcccctggaggggtttggcgagcgttcggcgcagaacctg
gtggcggcgatcgcgcgctcaaagacgcaacccctggagcgactgctggtcgctctcggg
ttgccgcacgtcggggcgcgcaccgcgcagctcttggcgcgggctttcgggtcgctcgag
gcgctgcaggcggccgacaccgccgacctcgcggcgctccccgaggtcggtgagacgacc
gccagagcagtccacgacgcgctgcagcagccggcgctgcgcgcgctcatcggcgagctg
cgcgcgcggggggtcggcgggggtgcggcggcgccgcgcagcgaccggcttaaagggttg
accttcgtgctcaccgggacgctgagcgagccgcgcgaccgcctcaaggagcggctcgag
gcgctcggggcgcgggtcgcctcgtcggtctccaaaaagacctcgtttgtcgtcgcgggt
gaggaccccggttcaaagctcgacaaggcgcgcgcgctcggggtccccgtcctcgacgaa
gcggggttggcggcgcttctagcggcgcgcctgggggaggaggccctcgcccttgagagc
agctaa
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integrated database retrieval system
