Tardiphaga robiniae: HB776_02220
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Entry
HB776_02220 CDS
T06738
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
trb
Tardiphaga robiniae
Pathway
trb03030
DNA replication
trb03410
Base excision repair
trb03420
Nucleotide excision repair
trb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
trb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HB776_02220 (ligA)
03410 Base excision repair
HB776_02220 (ligA)
03420 Nucleotide excision repair
HB776_02220 (ligA)
03430 Mismatch repair
HB776_02220 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
trb03032
]
HB776_02220 (ligA)
03400 DNA repair and recombination proteins [BR:
trb03400
]
HB776_02220 (ligA)
Enzymes [BR:
trb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HB776_02220 (ligA)
DNA replication proteins [BR:
trb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HB776_02220 (ligA)
DNA repair and recombination proteins [BR:
trb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HB776_02220 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HB776_02220 (ligA)
MMR (mismatch excision repair)
DNA ligase
HB776_02220 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HB776_02220 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
QND70185
UniProt:
A0A7G6TTV3
LinkDB
All DBs
Position
472339..474489
Genome browser
AA seq
716 aa
AA seq
DB search
MAKPAKTSPDISTLTKPKAKIELMRLSLEMEAHNKRYYQDDAPTVSDADYDALRRRVEAI
EAKFPDLVTGASPTQTVGAAPARGFAKVQHVVPMLSLGNAFSDEEVTEFVERIQRFLKLD
EIPAIVAEPKIDGLSLSLRYENGELIRAATRGDGFTGEEVTANVRTIKDIPEKLKGKHIP
AACELRGEVYMLKSDFLALNKKQEEAGDTVFANPRNSAAGSLRQKDVAITASRPLKFFAY
AWGEMSDYPMAEPTQHAMIAWLDKAGFTVNSEITLCKSVDDALAFYRRIGEIRAKLGYDI
DGVVYKVDRIDWQARLGFAGRAPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLT
PITVGGVVVSNATLHNADYIAGIGNDGQPLRDGVDIREGDTVIVQRAGDVIPQVVNVVLD
KRPKSAKPYEFPTKCPVCGSHAIRENDEVVTRCTGALVCPAQAVEKLKHFVSRLAFDIDG
LGDKQIQEFYDEGIIMHPVDIFTLAKRDERNTKKLRDREGYGETSVRNLFAAIDDRRKIE
LNRLIFALGIRHIGEGNAKLLARYYGSFAAFREAMLAAAAGQGGEENTSEAYADLNAIDG
VGEIVADAVVEFFAEKRNVKALDELLSEIEVLDVAQAKTDTPVAGKTVVFTGSLTKFTRD
EAKAGAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKARDLGVAVLTEDEWLALIGG
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacccgcaaaaacttcccccgacatctccacgctcacgaagcccaaagcgaag
atcgagctgatgcggctgtcgctggagatggaagcgcacaacaagcgctactatcaggac
gacgcaccgacggtgtcggatgcggactacgacgcgctgcgtcgccgggtcgaggcgatc
gaagccaaattccccgatctcgtcaccggcgcgtcgccgacacagacggtcggcgcagcg
cccgcgcgcggctttgccaaggtgcagcatgtggtgccgatgctgtcgctgggcaatgcg
ttcagcgatgaggaagtgaccgagttcgtggagcgcatccagcgctttctcaagctcgat
gaaatcccggccattgtcgccgagccgaagatcgacggtctgtcgctgtcgctgcgctac
gagaatggcgaactgatccgcgctgccacgcgtggtgacggattcaccggcgaggaggtc
accgccaatgtccgcactatcaaggacattcccgagaagctgaaaggcaagcacatccct
gccgcctgcgaattgcgcggcgaagtctatatgctgaagagcgatttccttgccctcaac
aagaagcaggaagaggccggcgacaccgtgttcgcaaatccgcgcaactcggcagcgggc
tcattgcgccagaaggacgtggcgatcacggcgtcacgtccgctgaaattcttcgcctat
gcctggggcgagatgtcggactatccgatggcggagccgacccagcacgccatgatcgcg
tggctggacaaggccggtttcaccgtcaattccgagatcaccttgtgcaagagcgtcgat
gacgcgctcgctttctatcgccggatcggcgaaatcagggctaagctcggctatgatatc
gacggcgtcgtctacaaggtcgaccgcatcgactggcaggcgcgtctcggattcgccggc
cgcgcgccgcgctgggccatcgcgcataaattcgcggctgagcaggcgaccacggtgctg
gagaagatcgacatccaggtcggccgcaccggcgcgctgacgccggtggcgcggctgacg
ccgatcacggtgggcggcgtcgtggtgtcgaatgcgacgctgcataatgccgactatatc
gcgggcatcggcaacgacggccagccgctgcgcgacggcgtcgatatccgcgaaggcgac
accgtcatcgtgcaacgcgccggcgacgtcattccgcaggtcgtcaatgtcgtcctcgac
aagcggccgaaaagcgcgaagccgtatgaatttcccaccaaatgcccggtctgcggcagc
cacgcgatccgcgagaacgacgaagtcgtcacgcgctgcaccggcgcgctggtctgcccg
gcgcaggcagtcgagaagctcaagcatttcgtctcgcggctggccttcgacatcgatggg
ctcggcgacaagcagatccaggaattctacgatgaggggatcatcatgcatcccgtcgat
atcttcacgctggccaaacgcgacgagcgcaacaccaagaaattgcgcgaccgagaaggt
tatggcgagacctcggtgcgcaatctgtttgcggcgatcgacgatcgccgcaagatcgag
ctcaatcgcctgatcttcgccctcggcatccgccatatcggcgaaggcaatgccaagctg
ctggcacgatactacggttcgttcgctgcgtttcgcgaagcgatgctggcggcggctgcg
gggcagggcggcgaggagaatacgtctgaagcctatgccgatctcaacgccatcgacggc
gtcggtgaaatcgtcgcggacgcggtggtcgagttcttcgccgagaaacgtaacgtgaag
gcgctcgacgagttgctgagcgagatcgaggtgctcgatgtcgcgcaggccaagaccgat
acgccggtggccggcaagacggtggtgttcacgggctcgctgaccaagttcacgcgtgat
gaagccaaagccggcgccgagcgcctcggcgccaaggtggcaggctcggtgtcgaagaag
acggactatgtcgtcgcgggtgaggacgccggttcgaaactcacgaaggcacgcgacctc
ggcgtggcggtgctcacggaagacgagtggctggcgctgattggggggtga
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integrated database retrieval system
