KEGG   Talaromyces rugulosus: TRUGW13939_06392
Entry
TRUGW13939_06392  CDS       T06879                                 
Name
(RefSeq) uncharacterized protein
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
trg  Talaromyces rugulosus
Pathway
trg03018  RNA degradation
trg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:trg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TRUGW13939_06392
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TRUGW13939_06392
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:trg03019]
    TRUGW13939_06392
   03041 Spliceosome [BR:trg03041]
    TRUGW13939_06392
Messenger RNA biogenesis [BR:trg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     TRUGW13939_06392
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     TRUGW13939_06392
Spliceosome [BR:trg03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    TRUGW13939_06392
 Complex C
  U2 snRNP components
    TRUGW13939_06392
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 55993887
NCBI-ProteinID: XP_035345438
LinkDB
Position
III:join(4679049..4679171,4679240..4679332,4679404..4679440,4679509..4679546)
AA seq 96 aa
MADTETGGASVSEPLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYV
VEEDENEEETVKTLRKQEEMLFVRGDSVVLISPQTS
NT seq 291 nt   +upstreamnt  +downstreamnt
atggccgacacagagacaggcggcgcttccgtgtcggaaccgttggatcttgtccggctc
tcgctggacgagattgtctttgtcaaattgcgcggtgatagggaactaaaagggcggctt
catgcctacgatagccactgcaacctggtgctcggcgacgtcgaggaaacaatttatgtg
gtcgaggaggacgagaacgaagaagagaccgtcaagactctaagaaaacaagaagaaatg
ctgttcgtcagaggtgactccgttgttctcatctcaccgcagacgtcatga

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