Treponema ruminis: DYE50_07180
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Entry
DYE50_07180 CDS
T07166
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tri
Treponema ruminis
Pathway
tri03030
DNA replication
tri03410
Base excision repair
tri03420
Nucleotide excision repair
tri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DYE50_07180 (ligA)
03410 Base excision repair
DYE50_07180 (ligA)
03420 Nucleotide excision repair
DYE50_07180 (ligA)
03430 Mismatch repair
DYE50_07180 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tri03032
]
DYE50_07180 (ligA)
03400 DNA repair and recombination proteins [BR:
tri03400
]
DYE50_07180 (ligA)
Enzymes [BR:
tri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DYE50_07180 (ligA)
DNA replication proteins [BR:
tri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DYE50_07180 (ligA)
DNA repair and recombination proteins [BR:
tri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DYE50_07180 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DYE50_07180 (ligA)
MMR (mismatch excision repair)
DNA ligase
DYE50_07180 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DYE50_07180 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
PTCB-BRCT
HHH_2
RNA_ligase
DNA_pol_lambd_f
DNA_ligase_ZBD
DZR_2
BRCT_2
DUF6011
Motif
Other DBs
NCBI-ProteinID:
QSI02348
LinkDB
All DBs
Position
complement(1608529..1610445)
Genome browser
AA seq
638 aa
AA seq
DB search
MDETARISELATLIKKYQDSYYNGEGEISDAEFDKLWDELKALDPSNPVLQRVGADSGNF
AKIRHIMPMGSQEKAANPQAFLAWAKTHAYDEYLVEYKLDGASLELQYSHGELLRAVTRG
DGTIGDDITANARKMQGVKAALYDSDNNKIDFTGAVRGEVIMTHTVHQKFYSDKANCRNA
ANGLMKRKDGSGSENLCLMTYDALATEGTSPFKDEEEKINWLQKCGFKTSPLKICKNPDE
VIEYRAEVMEIRKGLDYDIDGLVIKERRIDLEDASRARPDRQIAFKFSLEEAVSTLREVE
WSESGATYTPVAIFDEVQLNGTTVQRASLANPDTMRSLGVKIGSRLVVVKRGEIIPKIES
VLNEEPGQVTSAIVFPKKCAVCGSELVDEGSRLYCPNKNCDKRVLHQLQKWVGLVDIRDF
GDTLLRELFKNKEVASISDIYKLTAEQLVPYFLNEESIENQKNSLGAKKVFESIQNHRRI
SLAVFVAAFDIEGIGETMVQKLIDAGFNSLEKLLAASEEQIASVYGFAEITAKIFVEGLA
ENKEEMLSLTQSGTIQLEEIAGGALEGKSFCFTGELKTMKRADAEAMVKKAGGSCKSSVT
KDLTYLVTNDTESGSSKNQKAAKFGIPIINEEEFLKLF
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atagacgagactgcccgcatctctgagcttgcaactttaataaaaaaatatcaggactca
tactacaacggcgagggagaaatttccgacgccgaattcgacaaactctgggacgagctt
aaagcccttgatccttcgaatcctgtcctgcagagggtaggtgctgactcaggcaatttt
gccaaaatccgccacatcatgcccatgggcagccaggaaaaggccgcaaatcctcaagca
ttccttgcctgggcaaaaactcatgcctacgacgaatatctggtcgaatacaagcttgac
ggagcttcccttgagcttcagtattctcacggagagcttttgcgtgccgttacccgcgga
gacggaacaatcggcgacgacatcacggccaatgcccgcaaaatgcagggggtaaaagcc
gccctttatgactcagacaacaacaaaatcgactttaccggagccgtccgtggcgaagta
atcatgacccacacggttcaccagaaattttattctgacaaggcaaactgccgcaatgcc
gcaaacggcctcatgaagcgaaaggacggttccggaagcgaaaatctctgcctcatgact
tacgatgcccttgcaaccgaggggacaagtccttttaaagacgaagaagaaaaaatcaac
tggcttcaaaaatgcggattcaaaacttcgccccttaaaatctgcaaaaatcctgatgaa
gtgattgaataccgtgccgaagtcatggaaatcagaaaaggcctggactacgacattgac
ggccttgtaatcaaagagaggcggattgaccttgaggatgccagccgtgcccgccctgac
cgtcagattgcctttaaattctcgcttgaagaagcggtctcgactttgcgcgaggtcgaa
tggagcgaatcgggtgcaacttacacgccggtcgccatttttgacgaagttcagctcaac
ggaactacagtacagagggccagccttgcaaacccggacacaatgcgctccctcggagtc
aaaatcggaagccgccttgtcgtcgtaaagcggggtgagattatccccaagattgaaagc
gttttgaacgaagaacccggtcaggtaacgagtgcaatcgtctttccaaaaaaatgcgct
gtatgtggaagcgagcttgtcgatgaaggaagccgcctctactgtccaaataaaaattgc
gataaaagggtgcttcaccagctgcagaagtgggtaggccttgttgacatccgcgatttc
ggtgatactttgctgcgagagcttttcaaaaacaaggaagttgcttcaatttctgacatt
tataagcttactgcagagcagcttgttccatattttttgaacgaggaatcaatcgaaaac
cagaagaattctcttggtgccaaaaaagtctttgagagcattcagaatcaccgccgcata
tcccttgcagtctttgttgctgcctttgacatcgaaggaatcggcgaaacaatggttcag
aagctgattgatgccggattcaactcactggaaaaacttcttgctgcaagtgaagagcag
attgcctcggtttacggttttgctgaaatcacggctaagattttcgtggaaggtctggca
gaaaataaggaagaaatgctttccctcactcaaagcggaacaatccagcttgaagaaatt
gcaggcggtgctctggaaggaaagtctttctgctttacgggcgagctcaaaacaatgaag
agggcggatgccgaggctatggtcaaaaaggctggcggaagctgtaagtcttctgttaca
aaagatttgacctatctcgtcacaaacgatactgaaagcggctcttcaaagaaccagaag
gccgccaagtttggaattcctatcataaatgaagaggaattcctcaagcttttttaa
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