Trichomycterus rosablanca: 134309155
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Entry
134309155 CDS
T09921
Name
(RefSeq) protocadherin gamma-C5-like isoform X1
KO
K16497
protocadherin gamma subfamily C
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
trn04515
]
134309155
Cell adhesion molecules [BR:
trn04515
]
Cadherins
Protocadherins
134309155
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_C_2
Syndecan
Motif
Other DBs
NCBI-GeneID:
134309155
NCBI-ProteinID:
XP_062846863
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Position
1:24480853..24593956
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AA seq
967 aa
AA seq
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MERRKRRRLTEWPALWLAFSSLSCFSSAMAELRYSVPEELKPGSLVGNIAKDLTLSVQRI
NQRNVRVISNPSAQYFEINSDSGALVIRERIDREHMCGLELTCSLHLQIVLQNPLEMHGV
LVEIIDVNDNSPQFPARNSTLEISEAAAPGTRLRLESARDPDVGVNSLRAYRLEPNDYFQ
LNVETKSDGSKFPELVLDKALDREMRSGFRLLLTAVDGGQPEKSGTTLLLITVLDVNDNA
PAFDEPVKRVTLLENSPIGTVVAKLNATDVDSGSNGDISFLFSKYTPDRILNLFSVDAKT
GEIHVKGEVDYEQGNVYDLTVQARDGGSPAMEGSCHIKVEIIDVNDNTPEVTLTSLTNQI
SEDAETGTVIALISARDLDSDKNGQVTLKVSPGLPFILKSAFSEHYTLVTDGPLDRESVP
EYTVVLTATDGGSPPLSSQKKFTVSLSDVNDNAPVFSQPSYSVDIEENNAHSALIVTVSA
SDSDLGDNARLSYSILPTIINGSPVSSYVYINPENGNIFTMRALDYEQMNAFKIEVQVQD
SGSPPRSSNVTVHVFVIDQNDNPPVILYPSSSKDSGLLLNVPRSAPVGHLVSKIVGYDPD
SGHNAWLFYSIAPGEDAAYFRIGVHTGELRTMRKLIEDESSGRERYSFVVVVQDNGQPHQ
STSVSIIVNLEEKSSETAIDSDRTIFPLKSGEIPDISLYLIIALGCVTLVFLITIVVLLV
RCLRHKDDLACCYSRKDFRSRHAYQQRSHKDLHLQLNTDGPIRYMEVVGGPQEPHTRTYR
PYYSTISSRSDFVFVKTPLLSHNNTLNMTLTRKHLMDSTNEQNPPNADWRFNQNQRPGPS
GAGAGPEVAMATGPWPNPPSEAEQFQALMAAANEVSEATNTLGPGTMGLSTRYGPQFTLQ
HVPDYRQNVYIPGSTATLTANQQQQQQQQQLLQQALPSPQVPIAQDELSKAAGTPASKKK
TAKKEKK
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atggagcggagaaagaggagacgcttgacggaatggcccgcgctttggctcgccttttcc
tccctatcgtgcttttccagtgcgatggctgagctcaggtattctgtacccgaagagcta
aaaccgggctctttagtcgggaacatagccaaagacttgacgcttagtgttcagaggatt
aaccagaggaacgtgcgcgttatttcgaaccccagtgcgcagtatttcgagatcaactcg
gatagcggtgccttagtaattagagagaggatagacagggagcacatgtgtggattggaa
ttaacgtgttctttacaccttcaaatagttcttcagaaccctttagagatgcatggagtc
ctagtagagataatagacgtgaacgacaactcgccacaattcccggctcgcaactcgacg
cttgagatttcagaagcggccgcgccgggaacccggttacgcctggagagcgcgcgcgat
ccagacgtgggcgtcaattcgttgcgcgcgtatcgactcgagccgaacgactattttcaa
ttaaacgtcgaaaccaaaagtgacggcagcaagtttcctgaactagtactggacaaagca
ctagatcgtgagatgcgctccggatttcggctcttgctgactgctgtggacggcggacag
cctgagaaatccggtaccactctactgttgattacagttttggatgttaatgataacgca
ccggcatttgatgagcccgtgaagcgagtcacccttttggagaactctccaatcgggaca
gtcgtggccaaactaaacgccactgatgtagactcaggatcaaacggagacatatctttc
ctatttagcaaatacacaccagataggattctcaatctgttcagtgttgatgctaaaacg
ggagaaatccacgttaaaggagaggtggattatgaacagggtaatgtttatgacctcaca
gttcaggccagggatggcggatcccccgctatggagggctcctgtcacatcaaagtggaa
ataatagatgtaaacgacaacacgccagaagtgaccttaacctccctaaccaatcaaatt
agtgaggatgccgaaacaggcactgttattgctttaatcagtgcacgagacttagactca
gataaaaatggacaagtgactttaaaagtatctcctggtctgccatttatcctaaaatct
gctttcagtgagcattacactcttgtcacagacggcccattggaccgagaaagcgtccct
gagtacactgtggttttgactgccacagatggaggctctcctcctttgtcttctcaaaag
aaatttacagttagtctttctgatgtaaatgataatgctcctgttttttctcaaccctcc
tactctgttgacattgaggagaataatgcccacagtgctttaatagtgaccgtctcagca
tcagactcagatttaggtgacaacgcccgtctttcctactcaatcttaccgactatcatc
aatggtagccctgtttcttcttatgtctacatcaacccggaaaatggaaacatcttcaca
atgagagcattggactatgagcagatgaatgcatttaagattgaagtgcaggtgcaggac
agtggaagcccaccacgtagctccaatgtcactgtccatgtctttgtcatcgaccaaaat
gacaacccacctgttatcctttacccctctagctcaaaggactcaggcctactgctgaac
gtgcctcgctctgcgcctgttggccatcttgtaagtaagatagttggttatgaccctgac
agtgggcacaacgcatggctgttttacagcattgcaccaggtgaggatgctgcatatttc
cgtataggagttcacactggtgagctccgcactatgagaaaactgattgaagatgagtca
agtggccgggagcgctacagttttgtggtcgtcgtgcaggataatggacagcctcaccag
tctaccagtgtctctattattgtcaacttagaggagaaaagttcagagacagccatagac
tctgacagaactatctttcctcttaaaagtggtgaaattccggatattagcctgtacctc
ataatagcactgggctgtgtgactctggtctttctcattaccattgtggtgttgctggtg
cggtgcctcagacataaagatgacctggcatgctgctattcaaggaaggactttcgctcc
cgccatgcttatcagcaacgttctcataaggacctacacctccagctgaacacagatggg
cctatccggtacatggaggtggtggggggccctcaggagccccacacacgcacatacagg
ccctactactcaacaatatctagtaggagtgactttgtgtttgttaagactccactcctg
agccataacaacacattgaatatgaccctaaccaggaagcacttaatggactcaaccaat
gagcaaaaccccccaaacgctgactggcgtttcaaccagaaccagagacctggacccagt
ggagcgggtgctggtccggaggttgccatggcaactggaccctggccaaaccccccaagt
gaagctgagcagttccaggccctaatggctgctgcaaatgaagtgagtgaggcgaccaac
actttaggtcctggcaccatgggcctgagcacccgctatggcccccaattcaccctgcag
catgtccctgactatcggcagaacgtctacatcccaggcagcaccgccacactcaccgct
aaccaacagcagcagcaacagcaacagcagctactgcagcaggccctgccttctccccag
gtgcccattgcccaggatgagctttctaaagctgctggaacaccggcaagcaagaaaaag
acagccaagaaggagaagaagtaa
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