Trichomycterus rosablanca: 134312237
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Entry
134312237 CDS
T09921
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
trn03036
]
134312237 (smchd1)
03400 DNA repair and recombination proteins [BR:
trn03400
]
134312237 (smchd1)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
134312237 (smchd1)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
134312237 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_6th
Ig_SMCHD1_7th
Ig_SMCHD1_4th
Ig_SMCHD1_2nd
Ig_SMCHD1_5th
HATPase_c_3
SMC_hinge
HATPase_c
Mlp
Cyc-maltodext_C
Motif
Other DBs
NCBI-GeneID:
134312237
NCBI-ProteinID:
XP_062850083
LinkDB
All DBs
Position
4:23616328..23691331
Genome browser
AA seq
1968 aa
AA seq
DB search
MAESEVHSGRTVCILDCRPQNKVASQRMFDIGSMKYEQLLKAVRKEFSMSEDETFVLTTT
DRRKITSDIYDELPDGKTLYLLKSVDQELSIATQERIKYVPHFHTIVQCGQYEYYASEGQ
NALPYAIAELIDNALSATSRNSEIRRIDISLFFDESQGGPAVVVMDNGRGMTSKELNNWA
VYRLSKFNRDDRTFQSDEPGSAVSNPVRRSLNSDISYFGVGGKQAVFYIGQSVRIISKPV
GSPDVHEFIMSKEDFEQKEKNQEEIYSGIIQNRKPGDDSHMRVDKEHFLQSLVQEEKNKE
SFTTVVITGVHPEHVNYLKQDFISWTRELAHIYHYYVHGAYGNNMRNQRSDNSDLNIDIQ
VSLLDRASRPARQLNLREIDNDMQTLYINSSVSEFEFKASKGADATVEGLLRYHPFLYDR
ETYPEDPYSATSAVEDDEDCIVLHAEGRGKRPIFECFWNGRLIPYSSVNEFEWCTKPKKE
GALPFECYNRISGVLFTNDHFKVSTNKLTFIDLELQLCDKETIFTKVVNGQKQRVNIKNA
FLNWLKDCHEQHDKQVKFLGFKGVTTRTDVQTKRQQSPWAQYESIKWGSKTYKTSQLIKT
VRTVPVLYGSIIQFLLYGDHERDVFATGGYVQIALEPKVLYNEEKIIPISKIDRHAADTD
IKSYVAAELTKLPDKLRVTWPEGDSWPEKAVRTAGTSIGPIKVEILNKKGETMSRLPIAG
INAKKFQIDLKVCKQTSNREEIITSHNAAHSKWEYWFKKMENLTKVGKYTLHLQTTTHDG
DPKWAGKPLPHYTLHFTIKEGSPVSFNLGLVPSPVKLGVPVALSLQFKDEFDHPTQPPPD
LKPQIECSTLELSYEKTTTSGNNLTIKDLRARGKIKNHLDKIHTVKVVMPGLKQDFQTFQ
MSVLPGPPHHLLVTPEDKVIIENGTAAGFRVEVQDEFQNVTTHSRLIVHCQLLGAPGLPV
DTVDCSNTGTGLLLAKPIQLKNVSTEQILTAKFNIPNQKAVPVVERTLHIFPSTRIFRLE
VYREDEDSKVVLVLQNKERINWTAGDKLGDLKFRLYDEGDRMVPLTEDIAQNIKVNWAVD
VKAAELAKGILPCVCVPTKAQAEQVYQVAFQDQYTVDTSFIIVPRPDEPKQLKVTLSENV
VQMGETLSKDIYIEVIDQYGNRTDSLNADSMKALSVSADDLDESAINVDWQVTTGSLLVR
GVRFVSGRLGSRELCFQYQDFKEFVRISVTAGPPANITLLDAPEMPLHVMNGKDLNMPFL
LQLCDEWKNPIPDQRVVIVMKPLSAKLKVKSSVMSRPVDKEGKARFILETVTAQKGEHEL
EFFGKFSRNIIPGPVVKLNVMPDPSTPASLKVEYDTGTILRAGDTFPVFKVTLLSEEGEP
IKNLSPAGLSMLLWPGVASGSCPPSETTALKCSKPKDEEDDGHFYFRDKRIPESVGKYIM
QFLYTEGITKSLWSSQIALNVAANKPVKLEPETPPATPVVFNGSDPEGRTLLKRLCLKIM
DKYNNPAGLGINGQVVLTVENKIKAAEDLPMFENAANSLTYNLNNGEAIITDLVLMENSP
GLDGAEYVLEFNLVHEELNTTISPFTLPFRFYNDAENQKVMAVMSKKKDQLTHSIEIYKD
IVKTNEQILNELQGQMLDASSKQTQLSLELRKNGIDDSTLTGISAVKTLIATKIADLERI
ENEPHRKCAIPDPFRGRPQVLGKVAHLAQVKDDDSAKVISWHLLGDMDCVVTVTLVAAKK
IYDDTQGRQQVLSLETLFWKPNNRPLPHIRNGQCLFQPVGDPVYARDLLIFPEHAESCNM
VFTVLIGDTILVNDLDSANHYRKQVVQNKMQCPTLLTRQGDRIRSNGKFGGLQNKAPPIE
KLRGQVFSAPLPDEYHTIYKQKELLQQYLVAKQNASEVQAEYNTQNEYLQSPGMKQKRHE
LRQQEDKLKDIEKQIASTPVRPSPGSGVKRSPQDESPEPLPVKRIRES
NT seq
5907 nt
NT seq
+upstream
nt +downstream
nt
atggcggagtcagaagttcactcgggtcgaactgtttgtatcttagactgtcgcccacaa
aataaagtggcttctcagaggatgtttgatatcggtagcatgaagtacgagcagttactt
aaggctgtgcgcaaggaattttctatgtctgaagatgaaacttttgtccttactacaaca
gatcgccggaagataacttcagatatttatgatgaactaccagatggtaaaactttgtac
ctattaaaatctgtggatcaggagttgagtatcgcaacccaagagcggatcaagtatgtt
ccccattttcacaccattgtgcagtgtggacagtatgagtactatgccagcgaaggacag
aatgcactaccctacgccattgctgagctcattgacaatgcactttctgccacatcacgt
aattctgaaatcagaagaatcgacatcagtttgttttttgatgaatctcaaggtgggccg
gctgttgtggtgatggataacggacgtggaatgacctcaaaagagttaaataactgggct
gtttatcgcctttccaaatttaatcgagatgatcgcactttccaaagtgatgaacctggc
agtgcagtctccaatccagtccgacgcagtctgaacagtgatatatcctactttggtgtc
ggaggcaaacaggctgttttttacataggccagtccgtacggattattagtaagccagtg
ggctctccagatgtgcatgagtttatcatgtctaaggaagatttcgagcagaaggagaaa
aaccaagaggagatttattctggtataatccagaatagaaagcctggagacgactctcac
atgagggtggataaggagcatttccttcagtctttggttcaagaggagaaaaacaaggag
agttttactactgtagttataacaggagtacatccagaacatgtcaactatctcaagcaa
gatttcatatcatggaccagagaactggcgcacatttatcattattatgtacatggtgcc
tatggaaataatatgagaaaccaaagaagtgataattcagatttaaacattgatatccag
gtcagtctgcttgatcgcgcctctcgcccagcaaggcaacttaatctaagagagatcgat
aatgatatgcaaactctttatataaactccagcgtgtctgagtttgagtttaaagccagc
aaaggggctgatgctacagtagagggattgcttagatatcatccatttctgtatgataga
gaaacttatcctgaggacccatactctgcaacgtcagctgtagaggatgacgaggactgc
attgttttacatgccgagggcagaggaaaaagacccatctttgagtgtttttggaatgga
agattaattccttattcttcagtcaatgagtttgagtggtgtacaaaacccaagaaagag
ggagcactgccatttgaatgttataacaggatttcgggcgttcttttcacgaatgaccat
tttaaagttagcaccaacaaactgacctttatagatctggaactgcagctgtgtgacaaa
gaaaccatcttcacaaaagttgtcaatggtcagaaacaaagagtaaatatcaaaaatgca
tttttgaattggctaaaagattgccatgaacaacacgataaacaggtaaagttcttgggt
tttaaaggtgtgacaactcgcactgatgtgcaaactaaacggcagcagtcaccgtgggct
cagtacgaatccatcaagtggggcagcaaaacttacaagactagtcaactgattaagact
gtaaggacagtgcctgtcctgtacggctctataattcagtttttgctgtacggagatcat
gaacgtgatgtctttgccacagggggatatgtccaaatagcactggaacctaaggtgctg
tataatgaggaaaagatcatccctatatccaagattgacagacacgctgcagatactgac
ataaagagttatgttgcagctgaactgaccaagcttcctgacaaattgagggttacatgg
ccagaaggtgactcatggcctgagaaagctgttagaacagctggcacttcgattggtcct
ataaaagttgagattttgaataagaaaggggagacaatgtcccgattaccaattgccggt
ataaatgccaaaaaatttcagattgaccttaaagtttgcaaacaaacttcaaatagggaa
gaaataatcacctctcacaatgctgcgcactccaagtgggaatactggttcaagaaaatg
gaaaatttaactaaggtgggaaagtacacactacatctacaaactactacacatgatggt
gatcccaagtgggctggaaaacctctgcctcattatacacttcacttcactattaaagag
ggcagcccagtatcctttaatttgggtttagttccatcccctgtaaagttgggcgtgcca
gttgctctttctttgcaatttaaggatgagtttgaccatcctactcaaccacctcctgac
ctgaagccccagatagagtgcagtacgctggaactgagttatgagaagacaactacaagt
ggaaataatttaaccattaaggatctaagagctcggggtaaaataaagaatcatctggac
aagatacacactgtaaaggtggttatgccaggcctcaaacaagacttccagacattccaa
atgagtgtgctcccaggccccccacatcacttgctggtcacgcctgaggataaagttatc
attgagaatggaacagccgcagggttcagggtagaagttcaggatgagttccagaatgtc
acaacacactccaggcttattgtgcactgccagttgcttggagctcctggtttgccagtt
gatactgtggactgcagcaatactggcactggtctgttgctggcaaagccaatacaactg
aagaacgtcagcacagagcaaatcctcactgcaaagtttaacatacctaatcagaaggcc
gtaccagttgtagagagaactcttcacatcttcccgagcacacgcatcttccgtctagag
gtgtacagagaggacgaagattccaaagttgtcttggtgcttcagaacaaggagcgcata
aactggacggcaggtgacaagctcggcgatctgaaatttagattgtatgacgaaggggac
aggatggtgcctttaacagaagacattgcccaaaacataaaggtgaactgggctgtcgat
gtgaaagcagcagaattggcaaaaggaatactgccatgtgtgtgtgtccctacaaaagcc
caggcagagcaagtctatcaggtggcctttcaggatcagtacacggttgacacatccttc
atcatagtcccacggccagatgagcctaaacagttgaaggtgactctcagtgaaaacgtt
gtccaaatgggagaaactctgtctaaagatatttatattgaggtgattgatcagtatgga
aacagaacagacagtctaaatgcagacagcatgaaagctttgagtgtgtctgcagatgac
cttgatgaatcagccataaatgttgactggcaggtcactacagggagcttattggtgcgt
ggcgtgcgctttgtgtctggtcgtcttggctcaagggaactgtgttttcagtaccaggac
tttaaagagtttgtcagaataagtgtcactgctggcccaccagcaaatatcactctactg
gatgctccagaaatgcccctacatgtgatgaatggcaaagatttgaacatgccattcctt
ctacaattatgtgatgaatggaaaaaccctattccagatcagcgtgtcgtcatagtgatg
aaacctctctcagcaaagctcaaggttaaatcttcagtaatgtcccggcctgtggataag
gaaggaaaagccagattcatcctggaaacagtgacagcgcaaaaaggagagcatgagttg
gagttctttggaaagtttagtcgaaatatcattcctggtccggttgtgaagctgaacgtt
atgcctgatcccagcactcctgccagtcttaaagtagagtacgataccggaaccatctta
agagctggagatacgtttccagtatttaaagtgactctgctctccgaagaaggcgagcct
ataaagaatctaagtccggctggcctctccatgctgctatggccgggtgtagcttcagga
tcttgccctccatcagagacaactgcattaaagtgtagtaaacccaaagatgaagaagat
gatggccacttttacttcagagataaaagaattcctgaaagtgttggaaagtacattatg
cagtttctttatactgaaggaataaccaagtccctctggagcagccagattgctctgaat
gttgctgcgaataaaccagtgaaactagaacctgagacaccccctgcgactcctgtcgtc
ttcaatggtagcgaccctgaaggccgcacacttctaaaacggctgtgcctgaagataatg
gacaaatacaataacccagctggtctggggattaatgggcaggtcgtcttgactgttgag
aataagatcaaggctgcagaagatcttcctatgtttgagaatgcagccaacagtctgaca
tacaacctcaataatggagaggctattatcactgatttggtcctgatggagaacagtcca
ggtttagatggagcagagtacgtactagagttcaacctagtgcatgaagaacttaatacc
accatctctccttttactttacccttcaggttttacaatgatgcagagaaccaaaaggtt
atggctgttatgagcaagaaaaaggatcaactcactcactctattgaaatttacaaagac
attgtgaagaccaacgaacaaatcttaaatgaactacagggtcaaatgcttgatgcatct
agcaaacaaactcagctcagcttagagctcaggaaaaatggcattgatgattcaacatta
actggtatatcagcagttaaaacattaattgctacgaagattgctgatttggagagaata
gagaatgaacctcaccgaaaatgtgccatacctgatccgttcagaggcaggccacaagtt
ctaggaaaggtagcacatttggcacaggtaaaggatgatgattctgcaaaagttatctcc
tggcatcttcttggtgacatggactgtgtagttacagtgacattagttgcagcgaaaaaa
atctacgatgacacacaagggcgtcagcaagttctgtctttggagacgcttttctggaaa
ccaaataacaggccactgcctcacatcaggaatggtcagtgtttgttccagccagtaggg
gaccctgtttatgcacgagatctgctaatttttcctgagcatgctgagagctgtaacatg
gttttcacagttcttattggagacaccatattggtgaatgatttggattccgctaaccat
taccgcaagcaggttgtccaaaataaaatgcagtgtcctaccctgctgacacgacagggt
gatcgtatccgtagcaacggcaagtttgggggtctgcaaaacaaggctcctcctatagag
aagctaagaggacaggtgttcagcgcaccacttcctgatgaatatcacaccatttacaag
cagaaagaattgctgcagcagtacttagtagctaaacagaatgcatcagaggtccaggct
gaatataacacccaaaatgagtacctgcagagtcctggcatgaaacagaagcgacatgaa
ctccgacagcaagaggataagctcaaagacattgagaaacaaatcgccagcactcctgta
cgcccctcacccggttcaggagtgaaaagaagtcctcaagacgagtcacctgaacctctt
ccagtaaaaaggattcgggaatcctaa
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integrated database retrieval system
