Trichomycterus rosablanca: 134314474
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Entry
134314474 CDS
T09921
Symbol
c9orf72
Name
(RefSeq) guanine nucleotide exchange factor C9orf72 homolog
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
trn
Trichomycterus rosablanca
Pathway
trn04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
134314474 (c9orf72)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134314474 (c9orf72)
Membrane trafficking [BR:
trn04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
134314474 (c9orf72)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C9orf72-like
YbjQ_2
DUF7645
Motif
Other DBs
NCBI-GeneID:
134314474
NCBI-ProteinID:
XP_062851146
LinkDB
All DBs
Position
5:33444496..33463105
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AA seq
461 aa
AA seq
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MSAGCPPQSPAVAKTEVALEGLCPLLAATFAYWDNILGPRVWHIWSPKEQDSLLLSDDEV
TFLANHTLNGEILRSAESGAVDVKFFVLAEKGVIIVSLIFDGELKGDKNTCALSIILPQS
ELDFYLPLHRVCVERLKHVVRKGRIYMQKGCSIISVLTSEIVPIMKLLTSMKTHSVPEEV
HIKDTLLNDDDIGDSCSEDFLHKAISSHLQTCGCSVVVGSNPDKVNKIVLTLSLFLTPNE
RKCSRQCRADVSFQYDTGLFVQGLLKDSTGSFVLPYKQVLYSPYPSTHIDVDINTVQQMP
PCHEHMYHQHRYMQAELSKLWKTVSEDDISPENLNIQDSFTPDLNIFQDVIHKDTLVKNF
IDEVFLLKPGLNLRSVYLSHFLLLLHRKALTLLRYIEDDTQKGKKPFKSLRNLKIDLDLT
VEGDLNIIMAMAEKLRAGLHNFVFGRPFITSVQERDILGNF
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctggttgcccaccacaatctcctgctgtggctaaaacagaagtagcattggaa
ggattgtgccctctcctggcagccacctttgcgtactgggacaatatcttgggaccccgt
gtatggcacatttggtccccgaaggaacaagattctttgttgctcagtgatgatgaggtg
acctttctggcaaaccacacgttgaacggcgagatattgcggagtgcagagagcggggct
gtggatgtgaaattctttgtcttggcagagaaaggtgtgatcattgtatcacttattttt
gatggagaactgaaaggtgacaagaatacctgtgcactgtcaatcattctgccacaatca
gagctggacttctacctgccattgcacagagtgtgtgtggagaggctcaagcatgttgtc
cggaaaggacgcatctatatgcagaagggttgcagcattatctctgtgttaacgtctgaa
atcgttcccatcatgaagcttctcacctccatgaaaacacacagcgttccggaagaagtt
catattaaagacacattgttgaatgatgatgatattggagacagctgtagtgaagacttt
ttgcacaaagccatcagctctcatttacagacatgcggctgctctgttgttgttggcagc
aatccagacaaagtcaataagatcgtgctgacgttgtctttgttcctcactccaaacgag
aggaagtgctcgcgacagtgccgagccgacgtctcctttcagtatgatactggcctgttt
gttcaggggctgctcaaggactccacagggagctttgtgttgccttacaagcaggtactc
tattctccctatccatccactcacattgatgtggacattaacacagtgcagcagatgcct
ccctgccacgaacacatgtaccaccagcaccgttacatgcaggccgagctcagcaaactc
tggaagactgttagcgaggatgacatcagccctgaaaacctcaacatccaggactccttc
accccagacttgaatatatttcaggatgtgatacacaaagacacactggtaaagaatttt
atagatgaggttttcctcttgaagccaggcctaaacctgaggagtgtgtacttgtctcat
ttccttctcctgctgcacaggaaggctctgacactgctcagatatattgaggatgatacg
cagaagggcaaaaagccgtttaagtcgctgcgcaatctgaagatcgatcttgacttgact
gtggaaggagacctgaacatcatcatggcaatggctgagaagctgcgggcagggcttcat
aactttgtatttggaaggccttttatcaccagtgtacaggagcgtgacattctcgggaac
ttttaa
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