Trichomycterus rosablanca: 134314571
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Entry
134314571 CDS
T09921
Symbol
cxcl12a
Name
(RefSeq) chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1)
KO
K10031
C-X-C motif chemokine 12
Organism
trn
Trichomycterus rosablanca
Pathway
trn04060
Cytokine-cytokine receptor interaction
trn04672
Intestinal immune network for IgA production
trn04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
134314571 (cxcl12a)
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
134314571 (cxcl12a)
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
134314571 (cxcl12a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
trn04052
]
134314571 (cxcl12a)
00536 Glycosaminoglycan binding proteins [BR:
trn00536
]
134314571 (cxcl12a)
Cytokines and neuropeptides [BR:
trn04052
]
Cytokines
Chemokines
134314571 (cxcl12a)
Glycosaminoglycan binding proteins [BR:
trn00536
]
Heparan sulfate / Heparin
Chemokines
134314571 (cxcl12a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
IL8
DUF4635
Motif
Other DBs
NCBI-GeneID:
134314571
NCBI-ProteinID:
XP_062851281
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All DBs
Position
5:complement(40943456..40951562)
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AA seq
99 aa
AA seq
DB search
MDVKIILAAVLITVTLYCSGTDAKPISLVERCWCRSTVNTVSQRNIRELKFVHTPNCPFQ
VIAKLKNNKEVCINSEMKWLQQYLKNALEKMKKAKQQLN
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgaaaataatcctagcagcagttctgataacggtgactttatactgctctggt
actgatgccaagcccatcagtctggtcgagaggtgttggtgtcgctccacagtcaacaca
gtctcacagaggaacatccgtgagctaaagttcgtccacactcccaactgtcccttccaa
gtcatcgccaagctgaagaataataaagaagtctgcatcaactctgagatgaaatggctt
cagcagtacctaaagaatgctcttgaaaaaatgaagaaggccaaacaacaactgaactaa
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