Trichomycterus rosablanca: 134315233
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Entry
134315233 CDS
T09921
Symbol
kdm2aa
Name
(RefSeq) lysine (K)-specific demethylase 2Aa isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
134315233 (kdm2aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
trn03000
]
134315233 (kdm2aa)
04121 Ubiquitin system [BR:
trn04121
]
134315233 (kdm2aa)
03036 Chromosome and associated proteins [BR:
trn03036
]
134315233 (kdm2aa)
Enzymes [BR:
trn01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
134315233 (kdm2aa)
Transcription factors [BR:
trn03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
134315233 (kdm2aa)
Ubiquitin system [BR:
trn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
134315233 (kdm2aa)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
134315233 (kdm2aa)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
134315233 (kdm2aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
JmjC
F-box
PHD
LRR_6
Cupin_8
zf-RING_15
LRR_4
Motif
Other DBs
NCBI-GeneID:
134315233
NCBI-ProteinID:
XP_062852368
LinkDB
All DBs
Position
5:50449713..50494495
Genome browser
AA seq
1308 aa
AA seq
DB search
MENGVATLTFADGGRLKKRGRKRKNTEDEDVTLKRLCTRRRYHDDVISDDEIEGKRTFDL
EEKVYSNRFTSSRIKRMEGKDFTYEFVQRGGLRDPIIFERPEGLGIKMPDPDFSVNDVKM
FVGSRRMIDVMDVATQKGTEMSMAQWRRYYETPPSQREKLYNVISLEFSHTKLENLVKRP
ATVDMIDWVDNMWPRHLKERQRDSTNAIIDMQYPKVQKYCLMSVQGCYTDFHVDFGGTSV
WYHILRGGKVFWLIPPTPPNLELYENWVLSGKQGDTFLGDRATDCQRIELKQGYTFIIPS
GWIHAVYTPVDTLVFGGNFLHSFNISTQLNIYSIEDRTRVPAKFRYPFYYEMCWYVLERY
LYSMTNTSYLIPEFQKHSLGIGLMRESSSSEALNGHAKDEEDDDDDDGPPSPPTRPGVKV
HLTPFELEGLWNLLGKLEALPSNKKCVPSGIHNAPAVLYNIRVLLKEHANDNPKLSYTGK
PIVRWPKRPSWYQPPPPPAPAARPKLGATPIVPRPTKPASTMSALRRRRVRCKRCEACLR
PECGECNFCRDMKKFGGPGKLKQTCVLRQCLAPGLPLSAVCEICEEGNQDTGEELMECSN
CAQIAHPGCLKVPGEGLVNKDLPSCWECPKCVMNKDTDSESSGSGDDITAQEGSGGLRGE
GGAWHGVGRPPSSMSHGSLQKQVAAPEHRLRKRIKLEGSKMNKRKSALLDPRVAKIYRRH
GMESGSEGEDGEGRKRLSLHARGAMSARRGFGSSRRGLMRGSSHRGSRGGMMANSSSLKM
RRGLGARGERGGRVRVRGGSKMGRRRYESDDDDDDDDDEEDDEDDDDEEEEEESDEERST
GRAEKEYRSRRQRRRGEDEDEDDDDSEERDLDGEDEDMDDQDDRGDEDDEGENRSDCESD
PPVLLMSDLNDDLLDGSYLTVTLQRPPKANRDPGSIVPRLEAAVSPRGGGGTDGLQRKSL
NKLRQKNGSSLSSGNGLSQPKSNLAPGRQTRQRSSNLDARHGDTASPSVNPPSPPHATAI
ASFSPPKLLSHPSFRDVGNEPGCEKEVWVSVFRHLSRTELAVCMRVCKAWYKWCFDKRLW
TSIDLSRCRSVSAQAMTSIIKRQPVKLDLSWTPVSKKQISWIIHHLPGLKDLILTGCSSS
CASGLSSQNLPHLRTLDLCWAEGVKESQLKDLIMLPGSENRSRLRSLVSLRLSGLDVSDS
VLKLIVRYIPSLRTLDLSHCGVLTDQSLCLLTASGANARNTLREVNLAGCHKLTDTCLSY
LKRLSSLTLLDLRCCKGVTRRGCENFISDLSYCTLFCLTEDKLIQRVS
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atggagaacggagtggccacgctgaccttcgcggacggaggcaggctgaagaagaggggc
aggaagaggaagaacacggaggatgaagatgtgacactgaagcgcttatgtacgcggcgg
cgttaccatgacgacgtgatctctgacgatgagatcgaggggaagaggaccttcgacctg
gaggagaaagtgtacagcaatcgcttcacctccagcagaatcaagcgcatggagggaaaa
gattttacatatgaattcgttcagagaggagggctgagggacccaatcatctttgagaga
cctgaaggacttggaataaaaatgccagatccagacttcagtgtaaatgatgtaaagatg
tttgtgggcagccggcggatgatcgacgtgatggacgtggccactcagaagggcacagag
atgtccatggcccagtggaggcgatactacgagacgccgccctcccagagagagaagctg
tataacgtcatcagcctggagttcagtcacaccaagttagagaacttggttaagcgaccg
gccacggtggacatgatcgactgggtggacaacatgtggccacggcacttaaaggaaaga
cagagagattccaccaacgccatcatagatatgcagtatcctaaagtacagaaatactgt
ctgatgagcgtacagggttgctacacagatttccacgtagacttcggtggcacgtctgta
tggtaccacatactgcgtggaggaaaggtgttctggctaatccctcccacgccgccgaac
ctggagctctatgagaactgggttttgtccgggaagcagggagacacctttcttggcgac
agagccaccgattgccaaagaatcgaactcaagcagggctacacgttcatcatcccatct
ggctggattcatgcagtatacacgcccgtggacactctagtgttcggtgggaattttcta
cacagcttcaacatctccacgcagctcaatatctacagcattgaggacagaacgcgggta
ccagctaagttccgttaccccttttactacgagatgtgttggtacgtgctggaacgttat
ctgtacagtatgaccaacacctcatacctcatccctgagtttcagaaacactctctgggc
atcggcctgatgcgagaatcctccagctcggaggctcttaacggccacgcaaaggacgag
gaggacgacgacgacgacgacggtcctccctctcctccgacgcgaccaggcgtgaaggtt
cacctcactccctttgagctggaggggctgtggaatctgctcgggaaactcgaggctctc
ccatcgaacaagaagtgtgtcccgtcaggaatacataacgccccggctgtgctttataac
attcgggttttactaaaagagcacgcgaatgataaccctaaactctcgtacactggaaaa
cccatcgtcaggtggccaaaaaggccctcctggtaccagcctccccctcctcctgccccg
gcagcccgtcccaaactcggcgccactccgatcgtcccgcggccgaccaagccggcgtcc
accatgtcggcgctgcggcggcggcgcgtgcgctgcaagcgctgcgaggcgtgtctgcgg
ccggaatgcggcgaatgcaacttctgcagggacatgaagaaattcggcgggcccgggaaa
ctgaaacagacgtgcgtcctccgccagtgtctcgcccctggcttgcctctctctgccgtg
tgtgagatctgtgaggaagggaaccaagacactggagaggaactcatggaatgttctaac
tgtgctcagattgctcatcctggctgcctaaaggtgccgggagagggtttagtgaacaaa
gatcttcccagctgctgggagtgtcccaaatgtgtgatgaacaaggacacagactccgag
tcatcgggcagtggtgatgacatcacggctcaggaagggtctggggggctgaggggcgag
ggcggggcgtggcacggggtcgggcggcccccttcctctatgtcgcacgggtcgctacag
aaacaggtggcggccccagagcaccggctcaggaagaggatcaaactggaaggaagcaaa
atgaataaacgcaaatccgctttgctggatccccgtgtggccaagatctaccggagacac
gggatggagtcgggcagcgaaggcgaggacggcgaaggaaggaagaggctgtcgctccac
gccagaggcgccatgtccgcccgccgcggattcgggtcgagccggcgcggcctgatgaga
ggctcctcgcatcgaggcagccgagggggcatgatggcgaattcctcctccttaaaaatg
aggcgcggactcggcgcccgaggtgagcgcggcgggcgcgtccgagtgcgaggcggctcc
aaaatggggcggaggcggtacgaatcggacgacgacgatgacgacgacgacgacgaggaa
gacgatgaggacgacgacgacgaggaggaggaagaagagagcgacgaagagaggtccacg
ggccgggcggaaaaggagtaccgctcgcgccgacagaggcgccgaggcgaagacgaggac
gaggacgacgacgacagtgaagagcgagacctggatggcgaagacgaagacatggacgat
caggacgaccgaggggacgaggacgacgagggcgagaaccgttccgactgtgaatccgac
cccccagtcctgctcatgtctgatttaaacgacgacttgttagacggctcctacttgacc
gtcacgctccagcggcccccgaaagccaaccgcgaccccggatccatcgtccccaggctg
gaggcggccgtctctccgcgcggcggcggcggcaccgacggtctccagcgcaaatccctc
aacaagctccgccagaaaaacggcagctccctctcatctgggaacgggctctcgcaaccc
aaatccaacctcgcgccgggacgccagacgcgccagaggagttcaaacctcgacgcgcgg
cacggagatacggcttcaccttccgttaatcctccttctcctcctcacgccactgccatc
gccagcttctccccgcccaagctcctctctcatccctcgttccgggacgtggggaacgag
ccgggctgcgagaaggaagtttgggtgtccgtgttccgccacctgagccgaaccgagctg
gctgtgtgcatgagggtttgcaaagcctggtacaaatggtgttttgataaacgtctgtgg
accagtatagatttgagtcgatgtcgctcggtcagtgctcaggccatgacgtccatcatc
aagcgccagcccgtaaagctcgacctgtcctggacacccgtgtctaagaaacagatatcc
tggatcatccaccatctcccaggtctgaaggatctgattttgacgggctgttcctcgtcc
tgcgcctcgggcttgagttctcagaatcttccccatctgcgcacgctggacctgtgctgg
gccgagggcgtcaaagagtcccagcttaaagacctcatcatgctgccaggcagtgagaat
cgcagcaggctgaggagcttggtgtccctgcgcttatccggcctagacgtgagcgactcg
gttctgaagctgatcgtcaggtacatcccgtcgctgaggacgttggacctgtcgcactgc
ggcgtgctcaccgatcagtcgctctgcctgctcaccgccagcggcgccaacgcacggaac
actctcagagaggtcaacctcgcaggttgccataagctaacggacacgtgtctgtcctac
ctgaagcgtctctcctctctgaccctgctggacctgcggtgctgcaagggcgtgacccgg
cgaggctgcgagaacttcatctccgacctctcctactgcaccctcttctgcctgaccgag
gacaagctcatccagagggtttcgtaa
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