Trichomycterus rosablanca: 134316322
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Entry
134316322 CDS
T09921
Symbol
pkp1b
Name
(RefSeq) plakophilin-1 isoform X1
KO
K10387
plakophilin 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn04382
Cornified envelope formation
trn04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
134316322 (pkp1b)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134316322 (pkp1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
trn04812
]
134316322 (pkp1b)
Cytoskeleton proteins [BR:
trn04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filament-binding proteins
134316322 (pkp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
Atx10homo_assoc
HEAT
ARM_GAC_2
WRM1_C
DUF3874
Motif
Other DBs
NCBI-GeneID:
134316322
NCBI-ProteinID:
XP_062852750
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All DBs
Position
6:complement(17259555..17307933)
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AA seq
730 aa
AA seq
DB search
MALEPLRSTLATMEVRETSLALPSEGSYRSGQQRVLEQVSTMRRNKGSKYGSKGSTGTLS
PTSPKSDSVFLDFKYSHYQNGSAPLFESSMTNGAVKMRQQNQGVMQRSVSARSASYQRSQ
RSLSGSNMFPSSPTTISPPYSPPEPYFASTGNLGYAAVSNNRWTRSIKQAKGTERYSQYP
LNRNGQIMANNSIHRNGNSSQFYSNQAISRRPLSTHSNPEPKFSTVTRSKSEMTGMNGET
GSAEITLADAVNWLRVDDKNYQLRGASFIQHSTFSDNKAKEEVLKLNGIEFLMSLLKSSN
IEIQEASASALRNLVLKHQANKDELRRLNGVTQVSNLLQESDSLQLQKHLTGLLWNLSSA
ESIQPSLLPQSVPILTRKVLQPYAAPSEITENSELQDEIFCYATGCLRNLSCGTKNIRQA
LRKCEGLIDSLVKHMQVFLDKESYNDKSVENCVCILHNLTYHLDTEETYLFHKMLPQVKA
LGTNDTDMGPIGCFSNQSRKLQQSGVDLSLLEEHNPKGSGLLIHSQTLQLYLHLLSSSKN
GTTLEACCGALHNLTAKKEPLSDIFSQIIVQRLNGMEHISTLLNSDNANLKRDIMTLVGN
LSRPPSVHRTIARHGVCGVLDNLSSAISSGAKESPQSDSTIAMTCNTANTLLMADPELAG
KSLKPDLINSLTELSQKTTMPKAQQAAALLLHSLWSEKNIQPHLKKLKFNKQTFVNETTL
SYLKSALVIE
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggctttggaaccattaagatcgactttagcgaccatggaggttagagagacctcttta
gcgttgccttctgagggttcttaccgctcgggacagcagcgcgtattggagcaggtcagc
accatgagaaggaacaagggcagcaagtacggcagcaaaggatccacaggaaccctctct
cctaccagcccgaagagtgacagtgtgttcctggattttaagtactcccattatcaaaat
ggatcggcccctttgtttgagagctccatgacaaacggagctgtaaaaatgagacagcaa
aatcaaggggttatgcaaagaagcgttagcgccagatctgccagctatcagaggagccaa
agaagcctgagtggaagcaacatgtttcctagtagccccacaactataagtccaccctat
agcccacctgaaccttacttcgctagtactggtaatcttggctatgctgctgtttctaat
aaccgctggacccggagcatcaaacaagcgaaaggtacagagaggtacagccagtatcct
cttaacagaaatggccagatcatggcaaacaacagcattcatagaaacggaaacagcagt
cagttctattccaaccaggccattagtagaaggcctctttctacccactccaacccagaa
cccaagttctccacggtgaccaggagcaagagcgagatgaccggaatgaacggagagaca
ggctctgccgagatcacattagctgatgcggtgaactggctcagagttgatgataagaat
tatcagttgcgtggtgcttcctttattcagcacagcacgttcagtgacaacaaggccaag
gaggaggtactaaaactgaatggcatcgaattcctaatgtcccttcttaaaagctccaac
attgaaatccaggaggcgtctgcgtccgccctgcgtaaccttgtcctcaaacaccaagcc
aacaaagacgagttgcggcgcttgaatggggtgacccaagtctcgaacttgcttcaggag
tctgacagtcttcagcttcaaaaacacttgaccggtcttctgtggaacctgtcctcagca
gagagcattcaacccagtctactacctcagagtgtgccaattctcactcgaaaagttctg
cagccatatgcagctccctcagagattacagaaaattctgaactgcaagatgagatcttc
tgctatgctacaggatgcctacggaatttaagctgtggcacgaaaaacatcagacaagct
ttgcgcaaatgtgagggccttatcgactcgcttgtcaaacacatgcaggtcttcttggat
aaagagagttataatgataagtctgtggagaactgtgtgtgtattctgcacaaccttacc
tatcatctggatacagaagaaacttacttgttccacaagatgttaccacaagttaaagct
ttaggtactaatgacacagacatgggccccataggctgcttcagcaaccagagtcgaaaa
ctgcagcagagtggtgtagacttgtcactgttggaggaacacaaccccaaaggcagcgga
ctacttattcattcacagacactgcagttatatctgcatctgctgagctccagcaagaat
ggtaccactctggaggcatgctgtggagcgctgcataacctcaccgccaagaaggaacct
ttgtcagatatatttagtcagatcatcgtacagaggttgaatggtatggagcacatctca
actttgctgaactcagacaacgcaaatttaaagagagacatcatgacactggtggggaac
ctctcccgaccaccaagtgttcacagaacaatagctcgccatggtgtttgcggagtcctt
gataacttaagctctgccatttcaagtggtgctaaagagtcacctcaatctgacagcact
atagcgatgacctgcaacacggcaaacaccctgctgatggcagatcctgagttggcagga
aagagtctaaaacccgacttgatcaactcactgactgagcttagtcagaaaacaaccatg
cccaaggcacaacaggcagcagcacttctccttcacagcctttggtctgagaaaaacatt
cagcctcatctcaagaagctaaagttcaacaagcagacttttgtgaatgaaacaactttg
tcttatctgaagtctgctctggttattgaataa
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