Trichomycterus rosablanca: 134320115 Help Entry 134320115         CDS       T09921                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism trn  Trichomycterus rosablanca Pathway trn04115   p53 signaling pathway trn04145   Phagosome trn04148   Efferocytosis trn04350   TGF-beta signaling pathway trn04510   Focal adhesion trn04512   ECM-receptor interaction trn04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:trn00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     134320115 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     134320115 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     134320115 (thbs1b)    04148 Efferocytosis     134320115 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     134320115 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     134320115 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     134320115 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:trn04131]     134320115 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:trn00536]     134320115 (thbs1b) Membrane trafficking [BR:trn04131]  Endocytosis   Phagocytosis    Opsonins     134320115 (thbs1b) Glycosaminoglycan binding proteins [BR:trn00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    134320115 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 Laminin_G_3 TSP1_ADAMTS cEGF EGF Laminin_G_2 TSP1_CCN PHZA_PHZB Motif Other DBs NCBI-GeneID:  134320115 NCBI-ProteinID:  XP_062857499 LinkDB All DBs Position 9:35971393..35988323 Genome browser AA seq 1171 aa AA seqDB search MKLTGIFLLVMLWRCQSARVAESRDDNSVFDLFELVQVPKKNHGVTLVKGDDPYSPAYKI LNPELIPPVPEGAFRDLVDLVQAERGFLLLVNFKQAKRTRGALFTVEKLDGSGALFEVVS NGKANTLDIVFTTENKQQVVSIEDADLATGHWKNITLFVQEDRVHFYVGCEEVNSAELDA SIQSVLTTETPNIAKLRIGKGAVNEKFMGVLQNVRFVFGTTLDAILRNKGCQNSITSGVI TLDNPINGSSPAIRTDYTGHKSKDLQMICGFSCEDLASMFKELKSLGVVVRDLSDKLRKV TDEKNLLGGILGIKDGVCLHNGIVHKNKEDWTVDDCTECTCQNSATVCRKISCPLLPCAN ATVPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQ TRDCYLQECDKRFKQDGNWSHWSPWSSCSVTCGSGVITRIRLCNSPTPQMGGKQCQGEGR QTEKCETSPCPINGGWGPWSPWDACSASCGGGVQNRKRLCNNPPPKYRGKDCVGDATSTQ LCNKQDCPVDGCLSSPCFAGAKCTSFPDGSWKCGKCPAGFTGNGIDCQDIDECKEVPDAC FEFNGVHRCENTKPGYNCLPCPPRFSGPQPYGHGVEDAAAKKQVCTPRNPCLDGSHDCNK NARCNYLGHFSDPMFRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCP NLPNSGQEDYDKDGIGDACDDDDDNDGITDERDNCQFVYNPRQYDYDRDEVGDRCDNCPY NSNPDQADTDNNGEGDACAVDIDGDGILNERDNCPYLYNVDQKDTDLDGVGDQCDNCPLE HNPDQLDSDSDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDYDDD NDGIPDDKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNVPDIYDVCPENFDISETDFRK FQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTERD DDYAGFVFGYQSSSRFYVVMWKQITQTYWSSQPTKAQGYSGLSIKVVNSTTGPGEHLRNA LWHTGDTPGQVRTLWHDPKNVGWKDFTAYRWHLTHRPRTGHIRVVMYEGKKIMADSGRIY DKTYAGGRLGLFVFSQEMVYFSDLKYECRDA NT seq 3516 nt NT seq  +upstreamnt  +downstreamnt atgaagttaacaggaatatttttattggtgatgctttggagatgccagagcgcacgagtg gcagaaagcagagatgacaacagcgtcttcgacttgtttgagctcgtccaggtgcccaag aagaaccatggggtcaccctggtaaagggcgatgacccttacagccccgcctacaagatc ctgaacccagaactgatccctccggtgcccgagggtgcattcagggacctggtggacttg gtgcaggccgagcgcggcttcctcctgctggttaactttaagcaggcgaagcgcaccaga ggagccctgttcacggtggagaagcttgacggatcgggtgctttgtttgaagtagtctct aacggaaaagccaacacgctggatattgtgtttactacggaaaacaagcagcaggtggtg tctatagaggatgcagacctggctacaggccactggaagaacatcacgctgtttgtgcag gaggatcgtgtgcacttctatgtcggatgtgaggaggtgaacagtgccgagctggatgcg tctattcagagcgtgctcactacagaaacacccaatatcgccaagctgagaattggcaag ggggctgttaatgaaaagtttatgggtgtgctccaaaacgtgcgattcgtttttgggacc acattggatgcaattttgagaaacaaaggatgtcaaaactccattacttctggagtaatc actctggataatcctattaatggatccagtccagccatcaggaccgattacaccggccac aaatccaaagatctgcagatgatttgtggcttttcctgtgaagacctggctagcatgttc aaggaactgaagagcctcggtgtggtggtgcgagatctctcggacaaactacgcaaagtg acagatgagaaaaatttgctgggaggaatcttgggaatcaaagatggcgtgtgtcttcac aatggcattgtgcacaaaaacaaggaagactggacagtggatgattgtacagaatgtacc tgccagaactcagcgactgtgtgtcgtaaaatttcctgccccctgctgccctgcgccaat gcaactgttcctgatggtgaatgctgtccccgctgtggaaccccaagtgactatgctgag gatggctggtccccgtggtctgaatggacccattgttctgtgtcctgtggaaggggcatt cagcaacgtggccgctcctgtgaccgcatcaataacaactgcgagggcacatctgtgcaa acgagagactgctacctccaggagtgcgacaagcgctttaagcaagatggaaactggagc cactggtcaccatggtcatcttgctcagtcacctgtggatccggcgttatcacacgcatc cgtctgtgtaactctcctaccccccagatgggagggaaacagtgccagggagaaggcagg cagactgagaaatgtgaaacctcaccatgtccgatcaatggtggttggggaccatggtca ccttgggatgcctgctcagcttcctgtggtggtggcgtccaaaatcgcaaacgtctttgc aataatccaccacccaaatacagaggcaaggactgtgtgggtgatgccacgtccactcag ctctgtaacaagcaggactgtccagtcgatggatgtctgtccagtccctgtttcgctggt gcaaaatgtacaagctttcctgatgggtcctggaagtgtggaaaatgtccagccggtttc actggcaatggaattgactgccaggacattgatgagtgcaaggaggttcctgatgcttgc tttgaattcaatggagttcatagatgtgaaaacaccaaacccgggtacaactgcctgcca tgtcctccacgcttctctggtccacagccgtatggtcatggagtggaggacgcagctgca aagaaacaggtgtgcacaccccgcaatccctgcctggacggaagccatgactgcaacaag aacgcccggtgcaactacctgggccatttctcagatcccatgttccgctgcgagtgcaag cctggttatgctgggaatggacacatctgtggagaggacactgacctggatggctggcct aatgctgaccttgtatgtgtggagaacgccacttatcactgcaaaaaggacaactgcccg aaccttccaaactcaggtcaggaggactacgacaaggatggaattggtgatgcttgtgat gacgatgatgacaacgatggcattacggatgagagggacaactgccagttcgtctacaat cccagacagtatgactatgaccgggatgaggttggagaccgctgcgacaactgcccatac aacagcaaccccgaccaggccgacacggacaacaacggcgagggagacgcttgtgccgtg gacatcgatggtgatggtatactgaatgagagagacaactgtccttatctatacaatgtt gatcaaaaggatacggatctagacggggttggtgaccagtgtgataactgccccctggag cataatcctgaccagctcgactcggactccgaccgtgtgggtgataagtgcgacagcaat caggacatcgatgaagacggtcatcaaaacaacctggacaactgcccatatattcccaat gctaaccaggctgatcatgacaaggatggcaaaggagacgcttgcgattacgacgatgac aacgatggcatccctgatgataaagacaactgcagattggctttcaatccggatcagctg gactctgatggtgatgggcgtggcgatgtctgtaaggatgactttgaccaggacaatgtt ccagacatctatgatgtttgcccagagaattttgacatcagtgagacagacttccgcaaa ttccaaatggtacctttggaccccaagggtacttctcaaatcgatcccaactgggtagtc cgtcaccagggcaaagagctggttcagacagtcaactgcgaccctggcattgctgttggt tttgacgagtttaacgcggtggacttcagtggaaccttctttatcaacacagagcgagac gatgactatgctggatttgtgttcggttaccagtccagctcccgcttttatgtggtgatg tggaagcagattactcagacctactggtcaagccagcccaccaaagcacaaggctactct gggctgtccatcaaagtggtcaattccaccacaggaccgggtgaacacttaagaaatgcc ctctggcacaccggagacactccaggacaggtgcgcaccctgtggcacgacccaaaaaat gttggctggaaggactttactgcatacagatggcacctgactcacagaccaagaacagga cacataagagtcgttatgtatgagggaaagaagatcatggcagattctggaagaatctat gacaaaacctatgcgggaggtcgactaggtttattcgtcttctcgcaagagatggtatac ttctcagacctcaaatatgaatgcagagatgcataa

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