Trichomycterus rosablanca: 134325588 Help Entry 134325588         CDS       T09921                                  Name (RefSeq) thrombospondin-1-like   KO K16857   thrombospondin 1 Organism trn  Trichomycterus rosablanca Pathway trn04115   p53 signaling pathway trn04145   Phagosome trn04148   Efferocytosis trn04350   TGF-beta signaling pathway trn04510   Focal adhesion trn04512   ECM-receptor interaction trn04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:trn00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     134325588   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     134325588  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     134325588    04148 Efferocytosis     134325588   09143 Cell growth and death    04115 p53 signaling pathway     134325588   09144 Cellular community - eukaryotes    04510 Focal adhesion     134325588   09142 Cell motility    04820 Cytoskeleton in muscle cells     134325588  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:trn04131]     134325588   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:trn00536]     134325588 Membrane trafficking [BR:trn04131]  Endocytosis   Phagocytosis    Opsonins     134325588 Glycosaminoglycan binding proteins [BR:trn00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    134325588 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC VWC2L_2nd TSP1_ADAMTS TSP1_CFP_C EGF_3 cEGF Laminin_G_3 Zn_ribbon_NUD TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  134325588 NCBI-ProteinID:  XP_062863908 LinkDB All DBs Position 13:7839785..7848794 Genome browser AA seq 1164 aa AA seqDB search MLGVLCLLLMLWSSESRQITESRDDSVYDLFELSQVNKKHHGVSLVKGPDPNSPAYKILH PNLIPAIPEPSFRDLIYSIQEEKGFIFMANIKQAKRTRGSLFIVERKDGTGPFFEIISNG DANTVDLIYTMPNGQHMISIEDARLASGSWMNITLFVQEDRAQLYVGCEEINTSELDAPI HHILTQDVSDVATMRIGKGAVNNRFMGVLQNVRFVFKTTLDTILRNMGCDSSSYITDVVT GSSPAIRTDYTGHKTKDLQDVCGFSCEDLASMFKELKGLGVVVKKLSNEIHQVTAQSNEL KEYFKISTGVCKHNGVIYKDKDEWTVDSCTHCTCQNSAIICREMSCPLMPCANATVPDGE CCPRCGTPNDMAEDGWSPWSEWTHCSVTCGRGIQQRGRSCDRINSNCEGTSVQTRDCYLQ ECDKRFKQDGGWSHWSPWSSCSVTCGKGVITRIRLCNSPTPQMGGKDCQGEGRQTEPCQM PSCPINGGWGPWSPWDSCTVTCGGGLQKRHRLCNSPVPKHNGKDCIGDSRSTRLCNSQDC PIDGCLSNPCFGGTKCSSFPDGSWKCGDCPAGYTGDGIHCEDIDECKSVPEACFTLNGVH RCENTNPGYNCLPCPPRYSGAQPFGKGIEQAMSNKQVCEPMNPCRDGSHDCNRNANCIYL GVFSDIMYRCECKPGYAGNGHICGEDTDLDGWPNTNLHCVENATYHCKQDNCPDLPNSGQ EDYDKDGTGDACDYDDDNDGIPDDRDNCQLVFNPGQYDQDQDEVGDSCDNCPYDSNQDQA DTDKNGEGDACAIDIDGDGILNEKDNCPYVYNVDQRDNDYDGVGDHCDNCPLENNPDQID SDSDNVGDKCDSNQDIDDDGHQNTLDNCPYIPNANQADHDKDGKGDACDHDDDNDGVPDE KDNCRLAFNPDQLDSDGDGRGDICKDDFDQDNVPDILDVCPENFAISETDFRRFQMVPLD PTGTSQIDPNWVVRHQGKELLQTVNCDPGIAVGYDEFNAVDFSGTFFINTDRDDDYAGFV FGYQSSSRFYVVMWKQITQTYWSQTPTKAQGYSGLSIKVVNSTTGPGEYLRNALWHTGDT PGQVRTLWHDPKKIGWKDFTAYRWQLIHRPKTGLIRVIMYEGKKVMADSGPINDKTYAGG RLGLFVFSQEMVYFSDLKYECKDV NT seq 3495 nt NT seq  +upstreamnt  +downstreamnt atgttgggggttttgtgtttactcctgatgctgtggagttcagaaagtaggcaaatcaca gaaagccgagatgacagcgtgtacgacctcttcgagctctcccaagtgaataaaaaacac cacggagtgagtctggtcaagggacccgaccccaacagccccgcttacaaaatccttcac cccaacctgatccccgccatccctgagccctccttcagggacctcatctactccatccaa gaggaaaaaggctttattttcatggccaacatcaagcaagccaagaggaccaggggtagc ctgttcattgtggaaagaaaggatggcacaggtcccttctttgagatcatctccaatgga gatgccaatacggtagacctgatttacaccatgccaaacgggcagcacatgatctcgatc gaggatgcgaggctggccagtgggagctggatgaacatcactctgtttgtgcaggaggac cgcgcacagctctacgtaggttgcgaggagataaacaccagtgaactagatgcacctatc catcacattttgacacaagatgtttccgatgtcgcaaccatgaggattgggaaaggagcc gtgaacaacagatttatgggagtgctccagaatgtgcgctttgtcttcaaaaccactttg gacaccatccttcgtaacatggggtgtgatagctcttcctacataacagacgttgtgact ggttccagtcctgcaattcggacagattacactggccacaagaccaaagaccttcaggat gtctgtggcttctcttgtgaggacttggccagcatgtttaaggagctcaaggggcttggt gtggtggtgaagaagctgtcgaatgagatccaccaagtgacagcacaaagcaatgaatta aaggaatacttcaaaatctccactggggtgtgtaagcacaatggtgttatttacaaagac aaagacgagtggacagtggacagctgcacccattgcacctgccagaactctgccattatt tgccgtgaaatgtcctgcccactcatgccgtgtgccaatgccactgtacctgatggtgaa tgctgcccacgttgtggaactccgaatgacatggctgaggatggctggtcaccctggtcc gagtggacccactgctcggtgacttgtggccgtggcattcagcagcgagggcgctcctgc gatcgtatcaacagcaattgtgagggcacctcagtgcagaccagggactgttacctgcag gaatgtgacaagcgctttaagcaagatggaggctggagccactggtctccctggtcctca tgttcagtcacatgtggcaagggtgttatcacacgaatccggctttgcaactcacctacc ccacaaatgggaggcaaggactgccagggagaaggaaggcagacagaaccatgccagatg ccctcatgcccaatcaatggaggatgggggccatggtcaccatgggactcttgcactgtc acttgtggtggaggactgcagaaaagacaccgcctttgtaacagtcctgtgcctaaacat aatggaaaagattgcattggtgattccagaagcacccggttatgcaactctcaagactgt cccattgatggctgtctctccaacccttgctttggtggtaccaagtgctctagcttccct gatggctcctggaaatgtggggactgtccagctgggtatactggagatggcatccactgt gaggacattgatgagtgcaaatctgttcctgaagcctgctttacactcaatggagtccat cgctgtgaaaacaccaatccaggctataactgcttaccctgtccacctcgctactcggga gctcagcctttcggcaaaggcattgagcaggctatgagcaacaaacaggtttgtgaacca atgaacccatgcagggatggtagccatgactgtaacaggaacgccaactgtatttacttg ggtgtattttcggacatcatgtaccgttgcgagtgcaaacctggatatgctggtaatggc cacatttgtggagaagacactgacctggatggctggcccaacactaacctccactgtgta gagaatgcaacctaccactgcaagcaggacaactgccctgaccttcctaactctgggcaa gaggactacgacaaggatggaactggggatgcttgtgattatgatgatgacaacgatggt atccctgatgatagggacaactgccagttagtgttcaacccggggcagtacgaccaagac caggatgaggttggagacagctgcgataactgcccatatgacagcaatcaagaccaagca gacacagacaaaaatggagaaggcgatgcatgcgcaattgacattgatggtgacggtatt ctgaatgaaaaggacaactgcccatatgtgtacaacgttgaccagagagacaacgactat gatggggtcggagaccattgtgacaactgcccattggagaataaccctgatcagatcgac tctgattcagacaatgtgggcgacaagtgcgacagcaaccaggacatcgatgatgatggt catcagaacactctggacaattgtccatacatccctaatgccaaccaggctgaccatgac aaggacggcaagggtgatgcatgtgaccatgacgatgacaatgatggtgtccctgatgaa aaagacaattgcagactggcttttaatccagaccagttggattctgatggtgatggacgt ggtgacatttgcaaagatgacttcgaccaagacaatgttcctgatatactagatgtttgc ccggagaactttgcaattagcgagaccgactttcgtaggttccaaatggttcctctggac cccacgggaacctcacaaattgatcccaactgggtggtccgccatcaaggaaaagagctt ctacagacagtcaactgtgatcctggcattgctgtcggctatgatgagtttaatgctgtg gacttcagtggaaccttcttcatcaacaccgaccgagacgacgattacgccggttttgtg tttggttatcaatcaagctcccgcttctacgtggtaatgtggaaacagatcacacagacc tactggtcccagacccctacaaaagctcaaggttactctggattatccatcaaagtggtg aactctaccacaggtccaggagagtacctcaggaatgctttgtggcataccggagacacc ccaggacaggtacgcactttgtggcatgatcccaagaaaattggctggaaggacttcact gcctacagatggcaactgattcacagacctaaaactggacttatcagagtcatcatgtat gaaggcaagaaagtcatggcagattctggacctattaacgacaagacatatgctggtgga agacttggcctctttgtcttctctcaagagatggtttacttttcagacctcaaatacgaa tgcaaagatgtataa

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