Trichomycterus rosablanca: 134325821
Help
Entry
134325821 CDS
T09921
Name
(RefSeq) otoferlin isoform X1
KO
K19949
otoferlin
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134325821
Membrane trafficking [BR:
trn04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
134325821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
Ferlin_C
FerB
dsrm_Ferlin
FerI
Motif
Other DBs
NCBI-GeneID:
134325821
NCBI-ProteinID:
XP_062864130
LinkDB
All DBs
Position
13:complement(24583555..24601502)
Genome browser
AA seq
1788 aa
AA seq
DB search
MKRAKLRGSKDDGKGQDEPAILETEDLDRRFGRGPDPDTVSLASVTAVTTNVSNKRSKPD
IKIEPSAGRLMDFQVSVTVIEARQLVGLNMDPVVCVEIGDEKKYTSMKESTNCPYYNEYF
VFEFHVPPDVMFDKVLKVSVIHSKNLLRSGTMVGSFKMDVGTVYSQPDHQFYHKWAALCD
PDDITAGLKGYVKCDIAVVTKGDNIKTPHKANETDEDDIEGNLLLPEGVPADRQWARFYV
KIYRAEGLPKMNTSIMANVKKAFIGENKDLLDPYVQVQFAGQKGKTNVQKSCYEPIWNEQ
IIFTEQFPPLCKRMKIQIRDADKVNDVALGTHFIDLRKISNDGDKGFLPTLGPAWVNMYG
STRSYTLMDEYQDLNEGVGEGVSFRARLLISLAMEILDTSSPEITSSTEVQVEGVPNISE
NATGKIDEFFLFGAFLEATMIDRKIGDKPINFEVTIGNYGSEVDIPTKPKTKKSKKGEGD
EESELIQGSSDEEVETDGQLSSVSTTPPMKPVITDRNYFHLPYFERKPCIYIKSWWQDQR
RRQYNSNIIDHIADKLEEGLNDVQEIIKTEKAFPERRLRGVLEELSNGCSNFLSLANKDQ
TQIGLTKLDRERVKLCMWELENMGQQAKAMRSQVKKKTVKDKVKLTQNFLQKLRFLSDEP
QHSVPDVYIWMVSNGKRIAYARVPSKDILFSNIEEETGKDCAKVKTIFFKLPGKKSFGPA
GWTVQAKTEMYLWLGLNKHRKDFLNGLPNGFEENKAVKGPGMHSSPPISLIYTMKQIFQL
RVHMYQARSLFAADSTGLSDPFARVFFSTHSQVTEIVNETLCPTWDQLLVFDNVELYGEA
GELRDDPPIIVIEIYDQDSMGKADFMGRTFAKPTTKMSDEHYGPPRFPPQLEYYQVYRGN
CTAGEMLAAFELLQIGPGGKADLPPIDGPTDMDRGPILPVPIGIRPVLSKYRIEVLFWGL
RDLKRVNLAQVDRPRVDIECAGKGIQSALIANYNKNPNFSTLVKWFEVDLPENELLHPPL
NIRVVDCRAFGRYTLVGSHAVTSLRKFIYRPTDKTVNNWSAMEEIVIHTEPEPAVKKMET
MVKLDSASDAVVKIDMPDDDKDSKGKKKRKKGEEVEEEQLDESMLDWWSKYFVSIETLME
IIKAQEAEKVDTEEKEDLDADGDIKPDAKGNKKKKGKAKDKNKAMPGEGLPEKKKPKIEE
LKVYNRELENEFNYFEDWLHTFNLYRGKSGDDDEQNTDEDRLIGKFKGSLCMYKVSDDMS
REMGIDSNMGMFQNIPHNDPISVLVRVYVIRATDLHPADINGKADPYIAIKLGKSEIKDK
ENYISKQLNPLFGKSFDIEATFPMDSTLTVSIYDWDLVGTDDLIGETKLDLENRYYSKHR
ATCSITSSYAVYGYNVWRDPMKPTHILSKLCKDGKLDTPQYGPGGRVKVANRVYTGPTEI
EDENGLKKQTDEHLALAVLNHWEDIPRVGCKLVPEHVETRPLLNPDKPGIEQGRIEMWVD
MFPKDMPAPGPALDISPRKPKKFELRVIVWNTDEVVLEDDDIFTGEKSSDIFVRGWLKGQ
QEDKQDTDVHYHSLTGEGNFNWRFIYPFDYLMAEEKIVISKKESMFSWDETEYKIPARLN
IQVWDADHFSADDFLGAIELDLNRFPRGAKTAKQCTLDMVLNEQDMPMVNIFKQKRIKGW
WPFIARDENDEMEITGKVEAELHLLTGEEAEKSPVGEGRNEPEPLEKPNRPDTTFLWFIS
PLKAIRYLICNNYKWLIIKIVVALLILAMLGLFIYSMPGYMVKKLLGA
NT seq
5367 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtgcaaagttgcgtggctccaaggatgatgggaaaggccaagatgagccggcc
attctggagacagaggacttggacagaaggtttggcagaggaccagaccctgacaccgtc
tcactagcctctgttactgcagtaacaactaatgtctctaacaagagatctaagcctgac
atcaagattgaacccagtgctggaaggctgatggatttccaagttagtgttactgttatt
gaggccagacagctagtaggattgaacatggatccagtagtctgtgttgaaattggagat
gagaagaagtacacctcaatgaaggagtcaaccaactgcccttactacaatgagtacttt
gtctttgagttccacgttcctcctgatgtcatgtttgacaaggtcctgaaggtgtcggta
atccactctaaaaatcttctgcgaagtggaacaatggtcgggtccttcaagatggatgtg
ggaacagtttattcacaacctgatcatcagttctaccacaaatgggctgctttgtgtgat
cccgatgacatcactgcagggcttaaaggctatgtgaaatgtgacattgctgtggttaca
aagggtgacaatatcaaaactccacacaaagccaacgaaactgacgaggatgatattgaa
ggtaacctgctgcttccagaaggagttcctgctgatcgtcagtgggctcgattctatgtg
aaaatttatagagctgaaggcttacccaagatgaacaccagcattatggccaatgtaaaa
aaggcttttattggagagaataaagatttgttagatccatacgttcaggtgcaatttgca
ggtcaaaagggcaaaaccaatgtccagaagagctgctatgaaccaatctggaatgaacag
atcattttcactgaacaattcccaccattgtgcaagcgcatgaagatccaaatacgagat
gcagacaaagtaaatgatgtggcgctaggaacacatttcattgaccttcgaaagatctca
aatgatggtgataaagggtttctccccacactggggccggcctgggtaaacatgtatggt
tcaacacggagctacaccctaatggatgagtatcaggatctgaatgagggagtgggagag
ggggtttcatttcgtgcccgtcttctgatcagcttggccatggagatattggacacatca
tccccagagataacaagctctactgaggttcaagtagaaggggtgcccaacatttctgag
aatgccactggaaaaattgacgaattctttctgtttggagcatttctggaagcaaccatg
attgacagaaagattggcgataagcccattaactttgaagttacaatcggaaattatgga
agtgaggttgatattcctaccaaaccaaaaacaaagaagtcaaaaaagggtgaaggtgat
gaggagtctgaactaatccaaggttccagtgatgaagaagtggagactgatggacagcta
tcatcagtctccaccacaccaccaatgaaaccagtcatcactgacaggaactattttcac
ctcccatattttgagagaaagccatgtatctatataaagagctggtggcaggaccaacga
agaagacaatacaattccaacataatagaccacattgcagataaattggaagaggggctc
aatgatgttcaggagatcattaaaactgagaaagcttttcccgagcgcagactcagaggt
gttctggaggaattaagcaatggctgcagtaattttctatcactggcaaacaaggaccaa
acccagatagggctaacaaagctggatcgggagagagtgaaattatgcatgtgggagctg
gaaaacatgggccaacaagcaaaagcaatgcgatctcaggtgaaaaagaaaactgtcaag
gataaagtcaaactgacacaaaacttcctccagaaactgagattcttgtctgatgagcct
caacacagtgttccagatgtttacatttggatggtaagcaatggcaagcgcattgcctat
gctagagtaccatctaaagacattctcttttctaacatcgaggaggaaactgggaaagac
tgtgcaaaagtcaagaccatttttttcaagctcccaggtaaaaagagctttgggccagca
ggctggactgtgcaagccaagacagagatgtacctctggctaggcttaaacaagcatcgc
aaagacttcctaaatggactaccgaatggatttgaggaaaacaaggcagtcaaagggcct
ggcatgcactcatcgccacctatcagcctgatctacacaatgaagcagatcttccagctg
agggtacacatgtaccaggcaagaagcttgtttgcagcagacagcacaggtctgtcagac
ccatttgccagagttttcttctctactcacagccaggtcactgagattgtcaatgagacc
ctctgtccaacatgggatcaacttctagtatttgacaatgttgagctgtatggtgaggcc
ggtgaactgagggatgatcctccaattattgtaattgagatctatgatcaggacagtatg
ggcaaagctgatttcatgggaagaacttttgcaaagccaacaacaaagatgtcagatgag
cattatgggccaccacgatttcctcctcagctagaatattatcaagtgtaccgtggaaac
tgcactgctggtgaaatgcttgctgcttttgaactgttgcagattggaccaggtggaaag
gctgatcttcctcccatagatggacccacagatatggaccgtggtccgatactgcccgtc
cctataggcataagaccggttctgagcaaataccgcattgaggttttgttctggggcctg
agggatctgaagagagtaaaccttgctcaagttgacagaccccgtgtagacattgaatgt
gctggaaaggggattcagtcagctctgattgctaattacaataaaaatcccaattttagc
accctggtcaagtggtttgaagtggatctgcctgagaatgagcttctccatcctcccctt
aacattcgagtggtggactgcagagcttttggacgttatacactagttggctctcatgct
gttacgtcactgcgcaagtttatctacagaccaacagacaagactgtcaacaactggtct
gctatggaggaaattgtgatacataccgaaccggagcctgctgtaaagaagatggagacg
atggtcaaacttgactcagcatctgatgcagttgttaagattgatatgcctgatgatgac
aaagatagtaaaggaaagaagaagaggaagaaaggggaagaggttgaggaagaacagctt
gatgagagcatgttggactggtggtccaaatactttgtttcaatcgaaacactgatggag
ataataaaagcacaagaggctgaaaaagttgatacagaggaaaaagaagacctggatgca
gatggagatatcaagccggatgcaaaaggaaacaaaaagaaaaagggaaaagccaaggat
aagaacaaagcaatgccaggggagggattacctgaaaagaaaaagcccaaaattgaggag
ctgaaggtgtacaacagagagctagagaatgaatttaattactttgaagactggctccac
acgttcaacctttatagaggaaagagtggggatgatgatgaacaaaatacagatgaggac
agactcattggcaaattcaaaggctctttgtgtatgtacaaagtgtcagatgatatgagt
agagaaatgggaatcgattccaacatgggcatgtttcaaaacattccacacaacgaccca
atcagcgttttagttcgagtttatgtcatacgggcaacagacctgcaccctgcagatata
aatggaaaagcagatccatatatcgccattaagctaggaaagtcagagatcaaagacaaa
gaaaactacatctctaaacaactaaatcctttgtttggcaaatcatttgacatcgaggca
acatttccgatggactccaccctcactgtttccatctatgactgggatttggttggcact
gatgacctaattggggagacaaaacttgaccttgagaaccgttactacagcaagcacagg
gctacatgcagtatcacatcaagctatgcagtttatggctacaatgtatggagagatccg
atgaagccaactcacattctatcaaaactctgtaaggatggtaaattagatacaccccaa
tatggtcctggaggaagagtgaaggtggcaaaccgagtttatacaggaccaactgaaatt
gaggatgaaaatggtctcaaaaaacagacagatgagcaccttgctctagcggttcttaat
cactgggaggacattccacgagtgggctgcaaacttgttcctgaacatgtagaaacaaga
cctctactgaaccctgataaacccggcattgagcaggggagaattgagatgtgggtggac
atgtttccaaaagatatgccagcaccaggacccgcccttgatatttcaccacggaaacca
aagaaatttgaactcagggtaatagtctggaatacggatgaagttgttctggaggacgat
gatatattcacaggagaaaagtccagtgatatttttgttagaggatggcttaaaggacaa
caagaagacaagcaggacacagatgtccactatcactcactaacaggagagggtaacttc
aactggcgatttatttaccccttcgattacctaatggctgaagagaaaattgtcatctca
aagaaagagtctatgttttcatgggatgagacagagtacaagatcccggctcgtcttaat
attcaagtctgggatgcagatcatttctctgcggatgatttcctgggtgcgattgaacta
gacctgaacagatttcctcgtggtgcaaaaacagcgaaacagtgcacactcgacatggtt
ctcaatgaacaagacatgccaatggtcaacatcttcaagcagaaaagaattaagggctgg
tggccttttatagccagggatgaaaatgatgagatggaaatcacggggaaggtagaggca
gaactccacctcctgacaggtgaggaagctgaaaaaagtcctgttggtgaaggacgcaat
gagccagagcctctggagaaacccaaccgtcctgatacaacattcttgtggttcatcagt
ccattaaaagcaattcgatatctcatctgcaacaactacaagtggctgatcatcaaaata
gtggtggctctgctgattctagcaatgctaggcctatttatttacagcatgccggggtac
atggtgaaaaagctactcggagcttaa
DBGET
integrated database retrieval system
