Trichomycterus rosablanca: 134328680
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Entry
134328680 CDS
T09921
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
134328680 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
trn03400
]
134328680 (lig4)
Enzymes [BR:
trn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
134328680 (lig4)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
134328680 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
134328680
NCBI-ProteinID:
XP_062865919
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All DBs
Position
15:complement(6019980..6025089)
Genome browser
AA seq
918 aa
AA seq
DB search
MEGPNKSEGAEGTSKNGATSVTSVAAQVPFLHLCTVLERIQKAKSRPDKSKCLKDFIDSW
RKFHAALHKDNPSTTDSFYPAMRLIVPSFERERMAYGIKENMLAKLYIEVLGLPKTGTEA
NKLLNYRAPTTSKGDAGDFALTAYFVLKKRCTGQGNLSIKEVNDFLDSVAINNSSKQKDL
VKKSLLHLITQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAPELYNVTTDLDKVCR
QLHDPSISLNEVSISLFSAFRPMLAAVANIRQIEKQMGNRPFYLETKLDGERIQIHKDGD
VYKYYTRNSFDYTQQFGASPLEGSLTPYIHNVFNSHVVNCILDGEMMAYNPTTETFMQKG
SKFDIKRLVDDSELQTCFCVFDVLLVNDQKFGNEPLKKRYETLQTVFTPIKGRMQLVPKT
EANTMQEVVNALNDAIDDREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLI
VGGYWGKGRRSGMLSHFLCAVAETPSPGEKPTVFQTLCRIGSGYTMKELYDLGLKLAKHW
KVYRKNDPPAAILCGTERPEVYIEPRNSVIIQVKAAEIVTSDMYKTNCTLRFPRIERIRE
DKEWYECMTLDELNQFRAKASGKLASRHLSINEDEPDRKKRKLAPKAKKTIGIIDHFKSQ
DLSTVTKETDMFEDVEFCVMSGTDTHSKAELEKAVARCGGIVVQNPGKDTYCVIAGIENV
RVKNLIGSDQQDVVRASWLLECLDRKQVLPWQPRHMIHMSPSTREHFSKEYDRYGDSYYV
DTDAQQLREVFSRIGPNELEEASAALIEQRYGWDDMPTSMFRPCCAYFDRCADIRDPKSL
VEGTCLDFRVLEFRFHGGKVVERLEEGISHVVVAGDERLLELRTLRRGFKKKFKIVRESW
VTESIKAGHLLNDNEYLM
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggaagggccaaacaaaagtgagggagcagagggaacatccaaaaatggtgctacatct
gttacatctgtggctgcacaagtgccatttctccacctctgcacagttctggagagaatt
caaaaagcaaagtcccggcccgataaatccaaatgtttaaaggattttattgattcctgg
aggaaatttcatgctgcccttcacaaagataatcccagcacgacagattctttctaccca
gccatgcgtcttatagttccttcatttgaaagggagaggatggcctatgggattaaagaa
aacatgttagctaaactctacattgaggttttaggtcttccgaaaactgggacagaagcc
aacaaacttcttaattaccgggcacccactacatccaaaggagacgcaggagactttgcc
cttacagcttattttgtcctcaaaaagagatgcacgggccagggtaatctaagcatcaaa
gaggtcaatgacttcttggattcagtagccatcaacaactccagcaaacaaaaagatctt
gtgaagaaaagcctattacacctgataactcagagctctgctttggagcagaagtggctc
attcgtatgatcctcaaagacatgaaacttggagtaagcaaagaaacggtgctccaggtt
ttccacccagatgctccagagctatacaacgtcactacagacctggataaagtctgtagg
cagctacatgacccttcaatctctttaaacgaggtgtccattagcctcttttccgccttc
agacctatgctggcagctgttgccaacatccgccaaattgaaaaacaaatgggcaatcgg
cccttctacctcgagaccaagttggatggtgagcggattcagatccataaggatggagat
gtgtacaagtactacacccgaaattcatttgattatacacaacaatttggggcttcacca
ctagagggttccctcacaccatatatccacaatgtttttaactctcacgtggtcaactgt
atcttggacggagagatgatggcttacaacccaaccacagagacttttatgcaaaagggc
agcaaatttgacatcaagaggttggtagatgactctgagttacagacatgtttttgtgtc
tttgacgtcttgcttgtcaacgaccagaagtttggtaatgaaccactaaagaagcgatac
gagacccttcagacggtcttcacacccattaaaggtcgaatgcagctggtgccaaaaacg
gaagctaataccatgcaggaggtggtgaatgccctcaacgatgccatcgacgatcgagaa
gaaggaattatggttaaagacccaatgtccatctacaagccagataaacgtggtgaaggc
tggctgaagatcaaacctgagtatgtcgatggcctgatggatgaactggatttgcttatt
gtaggtggctactgggggaaaggcagacggagtggaatgttgtctcacttcctctgtgct
gtcgcagaaacaccaagtcctggagagaagcccaccgtgttccaaaccctttgtcgcatt
ggatcaggctacaccatgaaggaactctatgatctcggtttgaaacttgcaaaacattgg
aaagtctatcgcaagaatgaccctccagcagccattttatgtggaacggagaggcctgag
gtctacatcgagccaagaaactctgtcatcattcaagtcaaagcggccgagattgtaacc
agtgacatgtacaaaacaaactgcactttgcgtttccccaggatcgagagaatccgagaa
gacaaagaatggtatgagtgcatgaccttggatgaactaaaccagttccgtgctaaagcc
tcaggtaagctggcatccaggcacctgagcatcaatgaagatgagccagacaggaagaaa
agaaaacttgctccaaaggccaaaaagaccatcggcatcatcgaccacttcaagtctcaa
gacctgtccactgtcaccaaagagacagacatgtttgaagacgtagaattctgtgtaatg
agcggaactgacactcattccaaggccgagcttgaaaaggccgtggcacgctgcggaggc
atcgtggtacagaaccctggaaaggacacttactgcgtgattgcaggcatcgagaacgtg
agggtgaagaacctcattggttcagatcagcaagatgtggtgagggcctcctggctcctg
gaatgtctagacaggaaacaggtgctaccatggcaaccacgacacatgattcacatgtca
ccctcaacgagagaacacttttctaaagagtatgatcgctatggagacagttactatgtc
gacacagatgcgcagcagctgagggaggtcttcagcagaattgggcccaatgaactggaa
gaagcatctgcagctttaatagagcagcggtacggctgggatgacatgcccaccagcatg
tttaggccttgctgtgcctattttgacagatgtgctgatatcagagatccaaaaagtttg
gtcgaggggacgtgcctggactttcgggttctggagtttcggtttcatggaggaaaagtg
gtagagaggcttgaagaaggcatctcacatgtcgttgtggcaggagacgagagacttttg
gaacttaggacactgagacgtggttttaaaaagaagttcaagattgttcgagaatcatgg
gtaactgagtctattaaagcaggccacttactgaatgacaatgagtaccttatgtaa
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