Trichomycterus rosablanca: 134336201
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Entry
134336201 CDS
T09921
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
trn
Trichomycterus rosablanca
Pathway
trn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134336201 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
trn03041
]
134336201 (eftud2)
Spliceosome [BR:
trn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134336201 (eftud2)
Complex C
U5 SnRNP specific factors
134336201 (eftud2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
134336201
NCBI-ProteinID:
XP_062874979
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Position
22:complement(8211499..8239053)
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AA seq
971 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDEDEDVEAEDRDAAEADEDEEDNDQVDADEDGGGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKRFTLTEQELPVTVYDMEFLAD
LMDNPELIRNVTLCGHLQHGKTCFVDCLIEQTHPEIRKRDDADLRYTDTLFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTAGIRLSDGVVLFIDAAEGVMLNTER
LIKHAVQERLAITICINKIDRLILELKLPPTDAYYKLRHIVDEVNGMLSTYTTDESLVMS
PLLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFTKKAP
NSNSQRSFVEFILEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDVCVQHIPSPQGGARAKIEHSYTGGLDSDLGETMAECDPDGPLMCHTTKM
YSTDDGVQFHAFGRVLSGTLQAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIGQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggagactgatctgtacgacgagtttggtaactacatcgggccggagctagactctgac
gaagatgaagatgtagaggcggaagaccgagatgcagcagaggcggatgaggatgaggag
gacaacgatcaggttgacgctgatgaggacggtggtggaatggaggtggttctgcacgag
gataagaaatattatccgactgcagaggaagtctacgggcctgaagtggagactatagtc
caggaggaggatacacaaccactgactgagccaataataaagcctgtgaagacaaagcgg
ttcactcttacggagcaggagttgccggttacagtttatgatatggaatttcttgctgat
ttaatggacaatccagagctgattaggaatgtcaccctgtgtggtcacctacaacacggc
aagacatgctttgtagattgcttgatcgaacagacgcatccagaaatccgtaaaagagac
gacgcagatctgcggtatacagacacacttttcacagagcaggagagaggagtcggtatt
aagagtacacctgtaacaatggtgcttcctgactcaagagggaaatcctacttgtttaat
atcatggacactccaggtcatgtgaacttttcggacgaggtaacggctggaatccgactc
tcagacggagttgtgctatttatagacgctgctgagggggtaatgctgaacacggagcga
ttaatcaagcacgctgttcaggagcgcctagcgataaccatctgcatcaataaaatcgat
cgactgatcctggagctcaaactgccccccaccgatgcctactacaaactgcgccacatc
gtggacgaggtcaacggcatgctcagcacgtacacaactgatgagtctctggtgatgtct
cctctgctgggcaacgtgtgctttgcttcgtcccaatacagtatctgctttacgctcggc
tccttcgccaaaatctactccgatacttacggtgacataaactacaacgagtttgccaag
agactctggggagacatctacttcaaccccaaaacgaggaagttcactaagaaagcaccc
aacagcaactcgcagcgcagctttgtggagtttattttggagcccttgtacaagatcctc
tcacaggtggtcggtgatgttgacacgtctttaccacgagtgctggacgagttggggatc
cacctgaccaaagaggagctgaaactcaatattcgacctctgctgcgcctcgtttgcaac
cgtttctttggcgagtttacaggttttgtggacgtgtgtgtgcagcacattccatctcca
caaggaggcgccagagctaagatcgaacacagctacactggaggactggactcggacctc
ggagagacgatggccgagtgtgacccagacggtccactgatgtgtcacaccactaagatg
tacagcacggacgacggcgtgcagttccacgccttcggtcgggttctgagcggaaccctg
caggcgggacagccagtgaaggtgctgggagagaattacactctggaggacgaagaggac
tcgcagatctgcactgtcggacgcctctggatctctgtagccaggtatcagattgaagtg
aatcgtgtccccgctggtaattgggtgctcattgaaggctgtgaccagcccatcgtgaaa
acggccacaatcacagagcctcgcggcaatgaagaggctcagatcttcaggcctctgaag
ttcaatactgcatcggtgatcaagattgccgtggagcccgtgaacccgtctgagctgccc
aagatgttggatggactgagaaaggtcaacaagagctatccttcactcacaactaaggtg
gaggagtcgggagagcatgttatcctgggtacgggtgagctatatctggactgtgtaatg
cacgacctgagaaagatgtactcagagattgacatcaaggtggctgaccctgtagtgacc
ttctgtgagacggtagtggagacgtcctccctcaagtgctttgctgaaacgcctaataaa
aagaacaagatcaccatgattgcagagcctttggagaaaggtcttgcagaagacattgag
aacgaggtggtgcagatcacctggaacagaaagaaattgggagagttcttccagacgaaa
tacgactgggatttgctggccgcccgttccatctgggcattcggacccgacaccactggg
cccaacatcctggtagacgacacactgccctctgaggtggacaaagctctgcttggctcg
gtgaaggacagcatcgtgcagggatttcagtggggaactagagaaggccctctgtgcgat
gaacccattcgtaacgtgaagtttaagatcctggacgcggtgatcggtcaggagccgtta
cacagaggaggtggacaggtcattcctaccgcccgaagagttgtttactccgctttcctc
atggcaacacccaggctgatggagccttattactttgtggaagttcaagctcctgctgat
tgtgtgtctgctgtttacaccgtactggcacgcagaagaggtcacgtgacgcaggatgca
cccatcccaggctcccctctgtataccatcaaggctttcattcctgccatcgactcgttc
gggtttgagactgatcttcgaacacacacacaaggacaggcttttgccctcagtgtgttc
caccactggcagatcgttcctggcgatcctctggataagagcatcgtgattcgtccgttg
gagcctcaacctgccccccacctagccagagagttcatgatcaagacccgaagacgcaag
ggtttgagcgaggacgtcagtatcagcaagttcttcgacgatcctatgttgttggagctg
gccaagcaggatgtggtgttaaactaccccatgtga
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