Thermomicrobium roseum: trd_0210
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Entry
trd_0210 CDS
T00845
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tro
Thermomicrobium roseum
Pathway
tro03030
DNA replication
tro03410
Base excision repair
tro03420
Nucleotide excision repair
tro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
trd_0210 (ligA)
03410 Base excision repair
trd_0210 (ligA)
03420 Nucleotide excision repair
trd_0210 (ligA)
03430 Mismatch repair
trd_0210 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tro03032
]
trd_0210 (ligA)
03400 DNA repair and recombination proteins [BR:
tro03400
]
trd_0210 (ligA)
Enzymes [BR:
tro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
trd_0210 (ligA)
DNA replication proteins [BR:
tro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
trd_0210 (ligA)
DNA repair and recombination proteins [BR:
tro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
trd_0210 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
trd_0210 (ligA)
MMR (mismatch excision repair)
DNA ligase
trd_0210 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
trd_0210 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
UPF0758_N
Zn_ribbon_NUD
PEP_mutase
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ACM05038
UniProt:
B9KXM2
LinkDB
All DBs
Position
215547..217634
Genome browser
AA seq
695 aa
AA seq
DB search
MAEQPALQADRVPPEVRARVEELRRLIQRYNYEYYVLNAPTVSDAEYDALMLELRRWEEQ
YPELVTPDSPTQRVGAPPAEGFATVQHEIPMLSLGNVFSDGEIRAWAERVYRLSGRQDVE
FVTEPKVDGLAVSLLYRDGVLVRGATRGDGYTGEDVTNNVRTIRMIPLRLYPPEGVIVPP
VLEVRGEVYMNVRDFERLNRERGEQGLPLFANPRNAAAGSLRQLDPSVTASRPLRFAAWD
IGLWEGTEPPATHLATLEFLRQLQIPVVPDYRLCRSVDEVIAECHRWQERRDALEFEADG
VVIKVNDRALYQALGVVGREPRGATAYKFPAHEKTTIVRDVIWSVGRTGKLTPVAVLEPV
EIGGVIVERATLHNEEEIRRLGLLIGDAVVVQRRGDVIPKVVATIPQRRDGDERPVDIPR
QCPVCGAHTIRLEGEVDRYCPNPNCPARLKASVRHFASRNAMDIEGLGEKISDLFVDLGI
IRSLPDLYEIDWARVLQLEGFGPKKVENLRKAIEASKNRPFARFLFALGIRHVGERNAQL
LADHFRSIDRLMEATIDELLQIPGFGPAVAQSVFEFFREPKNREMIERFRRLGVRMAEEE
AAAVATVQGPLAGKTVVLTGRLETLTRSQAEELLRRAGAHVTDSVSRKTDYVFAGADPGS
KYVRAQQLGVPILGEEDLLRMLRESGIEVEAAARS
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcaaccagcgctgcaggcggatcgtgtcccgccggaggttcgtgcccgggtc
gaagagctgcggcggctcatccagcgctacaactacgagtattatgtgctcaatgctccg
accgtaagcgatgccgagtacgatgcgctgatgctcgaacttcggcgctgggaagaacag
tacccggaactggtgactccggattcgccgacccagcgggtaggtgcaccgccagccgaa
gggttcgccacagtccagcacgaaatccccatgctctcgctcggcaacgtcttctccgat
ggggaaatccgggcatgggcggagcgagtgtaccggctgagcggtcggcaggatgtcgag
ttcgtgaccgagcccaaggtcgatggtctcgcagtctccttgctctaccgagatggcgta
ctggtgcgcggtgcgacgcgtggagacgggtacacgggagaagacgtgacgaacaacgtg
cggacgatccgcatgatcccgctccgcctgtatccccccgagggggttatcgttccacct
gtcctggaggtgcgcggcgaggtctacatgaacgtgcgggacttcgaaaggctgaaccgc
gagcgcggggagcagggactcccgctcttcgccaatccccgcaatgcggctgctggctcg
ctgcgccagctcgaccctagcgtgactgcttcgcgaccgcttcgtttcgcagcgtgggat
atcggcctttgggagggaaccgagccgcccgcgacgcatctggctacgttggaattcctc
cgccagctgcagattccggtcgttcccgattatcggctctgccgttcggtcgacgaggtg
atcgctgagtgccatcgttggcaggagcgtcgtgacgcgctcgagttcgaagccgacgga
gtggtgatcaaggtcaatgaccgggcgctctatcaggcgctcggcgtcgttggacgcgag
ccgcgcggggccactgcgtacaagttcccggctcatgagaagacgaccatcgtccgggac
gtgatctggagcgtcggccggacggggaagctcactccggtggcagtgctcgaaccggtc
gaaatcggtggagtcattgtcgagcgagcaacgttgcacaacgaggaggagatcaggcga
ctcggtctgctcatcggtgatgcggtcgtagtgcaacgccgaggtgacgtgattcccaag
gtcgtcgccacgatcccgcagcggcgcgatggcgacgagcgaccggtcgacattccgcgc
cagtgcccagtgtgcggtgctcataccattcggctagaaggagaggtcgatcgctactgc
cccaatccgaattgtccggctcgcctgaaagcctcggtgcgccatttcgcctcgcgcaat
gcgatggacatcgagggcctcggtgagaagatctcggatctcttcgtcgacctcggaatc
atccgctcgctgcctgatctctacgaaatcgactgggcacgtgtcctccagctggaaggt
tttggccccaagaaggtggaaaatcttcgaaaagccatcgaagcgagcaagaaccgtccc
ttcgcgcgcttcctgttcgccttggggatccgtcacgtgggggagcgcaatgcgcaactt
ctcgccgaccatttccgctcgatcgaccggctcatggaggccacgatcgacgagcttctg
cagattccgggattcggtccggccgtcgcccaatcagtcttcgagttcttccgggagccc
aagaatcgggagatgatcgagcggttccgccgtctcggggtgcgcatggccgaggaagaa
gcggctgcggtggctaccgttcaggggccgttggcgggtaagacggtcgtgctgaccgga
cggttggagacgctgacgcgcagtcaggcggaggagttgctgcggcgtgccggcgcccac
gtgaccgacagtgtctcgcgcaagaccgactacgtcttcgcgggcgctgatcccggtagc
aaatacgtgcgagcacagcagctcggtgtaccgatcctgggggaagaagacctcctgcgc
atgctgcgcgagtcgggcatcgaagtcgaggccgccgctcgttcatga
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