Triplophysa rosa: 130551849
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Entry
130551849 CDS
T09216
Symbol
tdg.2
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
tros
Triplophysa rosa
Pathway
tros03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
130551849 (tdg.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tros03400
]
130551849 (tdg.2)
Enzymes [BR:
tros01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
130551849 (tdg.2)
DNA repair and recombination proteins [BR:
tros03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
130551849 (tdg.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
XRCC4
Motif
Other DBs
NCBI-GeneID:
130551849
NCBI-ProteinID:
XP_057185800
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Position
LG3:7940726..7944023
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AA seq
427 aa
AA seq
DB search
MHLFCNLNDVLFFKGCIRTDLMKYFKHSGRRDSGLRYPDFHSAFLFFLRCLNRYQTNHQQ
FHPEQVPQYNQMVNIEGPMEDKVMTNLAVHQNLYMDQQQPQQLPIPPPDPPLTPAKGKKR
GRPLKSEIKEQTQAEESPKKAKRTLDRFNGMSVEEVMARKLPDIITHNLEMLIIGINPGL
LSAYKGRHYPNPGNHFWKCLFLSGLTDEQLNHMHDQTLPEKYSIGFTNMVERTTPGSKDL
SNKEIREGGHQLLEKLQKYRPLIAVFNGKGIYEIFSKEILGVKAKNLEFGLQPYKVPDTD
TVCYLMPSSSPRCAQFPRAQDKVHFYIKLKELRDQLKGVLPTQEIEETNYSFDLTLAKED
AKKMAIKEEQHDPGYEETCGHGSWAEPQPAFGVRSNGTDHVTDNRWTMQPFADQIPDIRC
NSNNETT
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgcatttattttgtaatctgaatgatgtcctgtttttcaaagggtgcattaggacagac
ctgatgaaatatttcaaacatagcggacgcagagactctggtctccgttatccagatttt
catagtgcttttctcttttttttacgatgtttaaacaggtaccagacaaatcatcagcag
tttcatcctgagcaggtgccacaatataaccagatggttaatattgagggaccaatggag
gacaaagtcatgaccaatttagcagtacatcaaaatctctatatggatcaacaacaaccc
caacaattgcctatcccgccaccagatcctccgctgacacctgcaaaaggcaagaaacgg
gggcggcccctaaaaagtgaaataaaagagcagacacaggctgaggaatctccaaaaaaa
gcaaagaggacattagacagattcaatggaatgtcagtagaggaagtcatggccagaaag
ctaccagatatcatcacccataatctggaaatgcttattattggtatcaatccaggactc
ttgtcagcctacaaaggaaggcattatccaaatcccgggaaccatttttggaagtgcttg
tttctctctgggttgaccgatgaacagctgaaccacatgcacgatcagacgctacctgaa
aagtatagcattggtttcaccaatatggtggaaaggactacgcctgggagtaaagacctc
tcaaataaagagatccgtgaaggtggtcaccaacttttggagaagctccagaagtacagg
cctttaatcgctgtcttcaatggaaaaggtatttatgaaatatttagcaaggagattttg
ggagtgaaagccaagaacttagaatttggattgcaaccttacaaagtgccagacacagac
acggtttgttatctgatgccatcgtcaagcccacgctgtgctcagttccctcgtgctcag
gacaaagtgcacttctacattaagctaaaagaactcagggatcagctgaagggagtgctc
cctactcaggagatcgaagagacaaattactcgtttgatctgactctggccaaagaggat
gccaaaaaaatggcaatcaaagaggaacagcatgaccctggatatgaggagacctgtggt
catggatcttgggcggaaccacagccagcattcggtgttcgttctaatggaacagatcac
gtaacagacaaccggtggacgatgcagccgtttgcggaccagattccagacatcagatgt
aacagcaacaatgaaacaacctga
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