Triplophysa rosa: 130554982
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Entry
130554982 CDS
T09216
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tros03036
]
130554982 (smchd1)
03400 DNA repair and recombination proteins [BR:
tros03400
]
130554982 (smchd1)
Chromosome and associated proteins [BR:
tros03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
130554982 (smchd1)
DNA repair and recombination proteins [BR:
tros03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
130554982 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
130554982
NCBI-ProteinID:
XP_057190934
LinkDB
All DBs
Position
LG1:37597309..37642224
Genome browser
AA seq
1983 aa
AA seq
DB search
MAEAGAGNEPGHRDKTHQRSILVFDCRPDSSAEAPRAIDVAGMDYGSFLQAVRREFSLSK
NETFVISTTDRRQVDKELYNELLDGKTLHLLQSVDQELSVATQERIDYLPHYHTLVQCGM
YEYYASEGQKALPYAFAELIDNALSATANNTGKRIIEIRLLFDEAQGGPAVVVMDNGCGM
TSQQLNNWAVYRLSKFIRNNRVSEGDHTSYVRPKAVPRSLNSDISYFGVGGKQAVFYIGH
SVRMISKPTGSPDVHEFIMSKEDFERKEKNREHIYSGFIRNRKPGDCTHLNVSDEQFLRS
IVLEEEGKESFTAVVITGVQPEHVTYLKQYFHLWTRELAHTYHYYIHGIDGNNKTQPQRT
GPVSNIDIQISLFERSTRMPRVINLREVDNDMQTLYVNSSVSTFEFKATGAEDSLVEGMI
RYHPFLFDRETYPVDPYSASASGEDEDEDCVVLNPEGQGKRLIFECFWNGRLIPYTTVSE
FEWCVRPKNGAAVPLECYNRISGVLFANDRFQVSTNKLTFMDLELRLRDKETIFTRVHNG
QEQRVKIQREFINWLKECHERFDKQVMFQGFLGVMTRTDVTTKRLQSPWAKFKSMKWDGK
TYTKGQYVKSVRKLPVMFGSIVQFLLYGDYEGDVYATGGHVQIALEPKELYGEEKIIPIS
NIDRQATSASIEKNIEEEFAKLPDRLRLTWPEGNPWVDEDVRPAGAPMGPIQVEILNKKG
ESMSRLPLAGNAKKLSINLKVVWHSPKGDVQTNSHIGVHSAKWEYWFRTMENFSKLGNYT
LHLQAMISDSSANEWAGERLPHYTLNFTIKEGEAVAFVLGVISSPVQIGVPFTVPLDFRD
EFDYPTQPPTDIKPQLECSSLELSFDGMAFGCMCAIKDVKAKGKLSRHSKMHTVKVHIPG
LKQSVQSFQIAVQPGPPHNLVVFPEGDDVISVENGNPANIRVEVHDEYHNITTHPKLTVR
YQLLGAPDLPVDVVDCSHTGSGVLLAKPLQLKNVHAQQTYTAKFNIPNHKTVACVERKLR
VLPSSRVARLEVYRQEEGSDVMVLQNSEAIDWTAGDTLGSLNFRLYDEGDRLVSLPPKLT
NKIKVNWTAEVNADELSKGKLPSLCVPTQAQREHFYSVSFHDQHIVSTSFIIVTRPDEPE
TLRVTLSESAVQMGETLSGTIYVEEIDQFGNKTDRLSAESVKGLTVSADDLDEAALLIDW
QASTAQLSVCGVRFASGPPGPRELCFKYQNMEKFVRIKVTAGPPARLVLLEKPEMPVQVL
NGHGLETPITLQLCDEWGNPSPDQRINIVMKTLSPQLKVKSSVSSQPVDVEGKASFILEK
INGPKGEHQLEFRGSFSRNSISGPVVTLNVIPDPNIPFTLNIEYDRNATLCAGDIFPVFT
VGVLSEEGGPVRNICPASLSMLLWQGLAVGSRPSSDASTLKCSKRQDSETDGYFCFRDKQ
IPELAGKYAVQFVLALDKTKYRWSQQIAINVVPNKPAKLAPEVPPSTPVVSNGNTRVNRT
LLDSLCLKIMDNYNNTADEGLEGQVFVTVTGTGDMEVPRFENGDESVTYSLNNGEAHITD
LAILENSPGVDGAEYVLHFQPELKMSSATITSYSLTFRFCNDAERQKIMSTLSKKKDRLS
QTILMYRDIFDTNEQLISELKCQVRDATNKLCELKPEMIKNGLIMSELTTVAAIENEING
KKAILTTMENQHRRRCTIPDPFKGSPDVLGKVAHLAQVEDDDAAKVISWHILGDMDCVVT
ETTAAAKRIYNDTHGRQQVIPLETVFWRPNNRPLPHIKNGSPLFGPLGNPVFVKDLLIFP
QHVESCNKVFTSLLGDTILVDDLDSANHYRRGVVQNKIQCPTILTRQGERIRSNGKFGGL
QNKAPSIEKLRGQVFGAPLPKDHNSTRTQIELLQQYLGAMQKAANVQSDYNGHLQYLQSP
EMEQKQRELRQQEDELRDIEKTLASTLEGTSGPVTVKRSLEPETPEPSIPSKRSRRKTQK
LDS
NT seq
5952 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggccggagcgggaaacgagcccggccaccgggacaaaacgcaccagagatcg
atattagtgttcgactgtcgtccggacagcagcgctgaggcgccgcgggctatagacgtc
gcgggcatggactacggctcgttcctgcaggcggtgaggcgggagttttcattgtcgaaa
aacgaaactttcgttatcagcacgactgacaggaggcaggtcgataaagagctttacaat
gagctgctggatgggaagaccctgcacctgttgcagtctgtggatcaggagctgtctgtg
gccactcaagagcgcatcgactatctgccccactatcacaccctggtgcagtgtggcatg
tatgagtactacgctagcgagggacagaaagcactgccctatgcgtttgccgaactcatc
gataatgcgctgtcagccacggcaaacaacaccgggaaaaggatcattgaaatcagactg
ttgtttgatgaggctcagggaggacctgccgtcgtggtgatggataatggatgtggaatg
acatctcaacagctgaacaactgggctgtttatcgtctgtccaaattcatacgaaacaac
cgcgtatctgaaggcgatcacaccagttacgttcggcccaaagctgttccacgcagtctg
aacagtgacatctcatattttggagtgggtggcaaacaggcggtgttttacattggccac
agcgtcaggatgatcagcaaacccacgggttctcccgatgttcatgaatttatcatgtcc
aaagaagactttgagcgcaaggagaagaacagagaacacatttattcaggctttatcagg
aaccgaaagcctggtgactgcacgcatctgaatgtgagcgatgagcagtttctgcgctcc
attgttcttgaggaggaaggcaaagagagttttactgccgtcgtcataactggagtccag
ccagaacacgtcacctacctcaaacagtacttccacctgtggacccgagagttagcgcac
acctaccattattatatacacggaattgatgggaacaacaagacacaacctcagaggaca
ggccctgtctccaacatcgacattcagataagtctcttcgagcgctccactcggatgcca
cgtgtgattaatctgagagaggtggataatgacatgcagactctctatgtgaactccagc
gtgtcaacgtttgagtttaaagccaccggcgctgaagactctttagtggagggaatgatc
cgataccatccgtttctctttgatagagagacatacccagtggatccatactctgcatca
gcttcaggagaggatgaagatgaagattgtgtggtgttgaatcctgaaggtcaagggaag
agattgatctttgagtgcttctggaatgggcgcctgattccctacactactgtctcagag
ttcgagtggtgtgtgaggccgaagaatggagctgccgttcctttggagtgttataaccgg
atttcaggagttctcttcgccaacgatcgatttcaggtcagcacaaacaaactgaccttc
atggacctcgaacttcgactgcgtgacaaagagaccattttcaccagagtgcacaacggt
caggagcagcgagtgaagattcagagagagtttatcaactggctgaaggaatgtcatgag
cgctttgataagcaggtcatgtttcagggatttctaggtgtgatgacacgtacagatgtg
accaccaagcgtctgcagtctccctgggccaaatttaaatccatgaagtgggacggcaag
acttacacgaaaggacaatatgtaaaatctgtcagaaagctgcccgtcatgtttggatcc
atagttcagttcctgttgtatggagattatgaaggagatgtttacgctacaggtggtcac
gtccagattgcactggaaccaaaggagttgtatggcgaagagaagatcattcccatctcc
aatattgaccgacaggccacatccgcatctattgaaaagaacattgaggaggaatttgcc
aaacttcctgatcgcttgaggctaacgtggcccgagggaaacccgtgggttgatgaagac
gtcagaccagcaggcgcacccatgggtcccattcaagtggagattttgaacaagaaagga
gagtcgatgtctcggctgcctctggctggcaatgccaagaagctgtccattaacctgaaa
gtcgtctggcactctcctaaaggagatgtgcagaccaactctcacatcggtgtacattcg
gctaagtgggaatactggttcaggactatggagaactttagtaagctgggcaactacaca
cttcacctgcaggccatgatcagcgacagctcggctaatgaatgggctggagaaagatta
cctcactacactctcaatttcactattaaagagggtgaagctgtagcttttgtgttgggc
gttatttcttctccggtccagatcggtgtccccttcactgttcctctggattttagggat
gagtttgattatcccacccagccacccactgacattaaaccccagctggagtgcagttca
ctggagttgagttttgatggaatggcgtttgggtgcatgtgtgccatcaaggacgtgaaa
gccaagggaaaactcagtcgacacagcaagatgcacacagtgaaggttcatattccaggg
ctgaagcagagcgttcagtcctttcaaattgctgtgcagcccggccctccgcacaatctc
gttgtgtttcctgaaggtgatgatgtgatttctgtagagaacggcaatcctgcgaacatc
cgagtggaagttcacgatgagtatcacaacatcaccactcatcccaaactcacggtccgc
tatcagttgctgggagctccggatcttcctgtagatgtggtggactgcagtcacacggga
tctggagttctgctggccaaacctcttcagctgaagaacgtacacgctcaacaaacctac
accgctaaattcaacattcctaaccataaaacagtggcgtgtgtggagcgtaagcttcgt
gtgttgcccagctcacgtgtggcccgtctggaggtctacagacaggaggagggctctgat
gtcatggtgctgcagaattcagaggccatcgattggacggctggtgacacgctcggaagt
ctcaactttagactgtacgacgagggcgataggctggtttccctgccgccaaaacttacc
aacaagatcaaggtgaactggacggcagaggtgaacgctgatgagctttccaaaggaaaa
cttccatctctgtgtgtccccactcaagcacaacgagagcatttctacagcgtgtctttc
cacgaccagcacatagtcagcacctccttcatcatagtgactcgcccagatgaaccagaa
actcttcgggtcactctcagcgagtcagctgtccaaatgggtgaaactctgtcaggaacc
atttatgtggaggagatcgatcagtttgggaataaaacggaccgtctgagtgctgaaagc
gtgaagggtttgactgtgtctgcagatgatctggacgaagcagctctgctcatagactgg
caggccagtactgcacagttatcggtatgcggtgttcggtttgcgtcaggacctcccgga
ccaagagagttgtgttttaaatatcagaacatggagaaatttgtgcggatcaaagtcact
gctggacctccagcaagactcgttctgcttgaaaaacctgagatgcccgtgcaggtgttg
aatggccatggtttggagacgcccatcactcttcagctgtgtgatgaatggggaaatcct
tcaccggatcagaggatcaacatcgtgatgaagactctctccccacagctgaaggtcaaa
tcgtctgtgtcgtctcagcctgtagatgttgaaggaaaagccagtttcatattagaaaaa
ataaacggtccaaaaggagaacatcagctggaatttcgaggatcttttagcaggaacagt
atttcaggacctgtagtgacactgaatgtgattcctgatcccaacatacccttcacattg
aatattgagtacgacagaaatgccacgctatgtgctggagacatcttcccagtgttcaca
gtgggcgtgttgtctgaagagggcggtccggtgaggaatatctgcccagccagtttgtcg
atgctcctgtggcagggcttagcggtggggtctcggccgtcctctgacgcctccacttta
aagtgcagtaaacgtcaggactcagaaacagacggctacttctgcttcagggacaaacag
attccagagctagcagggaaatatgccgtccagtttgttttggctttggacaaaaccaaa
tatcggtggagccaacagattgcaataaatgtagttcccaataaaccagcgaaattagcc
ccggaggtcccgccctcaacgcctgtagtgtccaatgggaatactcgggtcaatcgcacg
ctgctggacagcctgtgtctaaagatcatggataattacaataacactgcagatgagggg
ttggaaggacaggtgtttgtcacggttacgggtacaggagacatggaagttcctcgtttc
gagaatggagatgaaagtgttacatacagcctcaataatggagaggctcacatcactgat
ttggccatcttggagaacagtccaggtgtagatggagctgaatacgttctccacttccag
ccggagctaaagatgtccagtgcgaccatcacttcatatagtctcacattcagattctgc
aacgatgcagaacgtcagaaaatcatgtcgactctgagtaagaagaaagatcgtctttct
caaaccattctgatgtacagagacatcttcgacaccaatgagcagctcatatcagaactg
aaatgtcaggtgagagatgctactaacaaactatgtgagctgaaaccagagatgatcaaa
aacggattgatcatgtcagaattaaccaccgtcgcagcaatagagaatgaaataaatggg
aaaaaagctattttgaccacgatggagaatcaacatcgccggagatgcaccattcccgat
ccttttaaaggcagcccggatgttctcggaaaggtagctcacctggcacaggttgaggat
gatgatgcagcgaaggtcatctcctggcatatcctgggtgacatggactgcgtggtcacc
gaaactacagccgcggccaagaggatctataatgatacacacggacgacagcaggtgatt
cccctcgagacggtcttctggagacccaacaacagacccctgccacacatcaagaatggc
tcgccactcttcggtcctcttgggaatcctgtgtttgtcaaagatctgctcatttttcct
cagcacgtcgagagctgcaataaagtgttcacgagccttctcggagacaccatcctggtg
gatgatttagattctgctaatcattaccgcaggggggtggtccagaataagattcagtgt
ccgacgatcctgacccgtcagggggagaggatacgcagcaacggcaagtttggaggtctg
cagaacaaagctccgtccatcgagaagctcagaggacaagtgtttggagctccattaccc
aaagaccacaacagcacccgcactcagatagagctgttgcagcagtatttgggtgcgatg
cagaaggctgcgaatgtccagtccgattataacggtcatctacagtacctgcagagtcct
gagatggagcagaaacagcgagagctccggcagcaggaggacgagttgagagacatcgag
aaaaccctcgccagcacacttgaaggcacgtctggccctgtgacagtgaaacggagtcta
gagccggaaacaccagagccctccatcccttcaaaaagatcccgtcgcaaaacacaaaaa
ctggattcctga
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