Triplophysa rosa: 130559011
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Entry
130559011 CDS
T09216
Symbol
c9orf72
Name
(RefSeq) guanine nucleotide exchange factor C9orf72 homolog
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
tros
Triplophysa rosa
Pathway
tros04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130559011 (c9orf72)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tros04131
]
130559011 (c9orf72)
Membrane trafficking [BR:
tros04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
130559011 (c9orf72)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C9orf72-like
Motif
Other DBs
NCBI-GeneID:
130559011
NCBI-ProteinID:
XP_057197819
LinkDB
All DBs
Position
LG9:complement(11817996..11823787)
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AA seq
462 aa
AA seq
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MSAACPPQSPAVAKTEVLVDDWCPVLAATFAYWDNILGPRVRHIWAPRGQGFSLLCDGEV
TFLANHTLNGEILRSAESGAVDVKFFVLAEKGVIIVSLIFDGELKGDKNTCALSIILPQS
ELSFYLPLHSVCVERLKHIIRKGRICMQKGYNIISVLSSEIVPIMELLTSMKKHSVPEEV
DIKDTVLNDDDIGDSCHEDFLHKAISSHLQTCGCSMVVGSNPEKVNKIVLTLCLFLTPAE
RKCSRLCHPDGLFKYDTGLFVQGLLKDSTGSFVLPYRQVLYSPYPTTHIDVDINTVKQMP
PCHEHMYHQRRYMRSELSALWRAASEDDISPDNLINAQDSFTPDLNIFQDVMHRDTLVKS
FIDEVFLLKPGLSLRSVYLSHFLLLLNRKALTLLRYIEDETQKGKKTFRSLRNLKTDLDL
TVEGDLNIIMAMAEKLRAGLHSFVFGKSFLTSVQERDLLLSF
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagcctgtcctcctcaatctcccgctgtggctaagactgaggtgctggttgat
gattggtgtcccgtgctggccgccaccttcgcctactgggacaacatcctgggaccccgc
gtacggcacatctgggcccccagaggtcagggattttcgctgctttgtgatggagaggtc
acgtttttagccaatcacactctcaacggggagattttgcgaagcgctgagagcggtgcg
gtggacgtgaagtttttcgttctggcagaaaagggagtcatcattgtctcgctcatcttt
gatggagaactcaaaggggataagaacacttgtgctctgtcgatcattttaccgcagtca
gagctaagcttctatctgcctcttcacagtgtgtgtgtggaaagactcaaacacatcatc
cgcaagggacgcatctgcatgcaaaagggttacaacatcatctctgtgttgtcatctgag
atcgttcccataatggagcttctcacctccatgaagaaacacagtgtacctgaggaggtg
gatataaaggacactgtgctcaatgatgatgatatcggggacagctgtcacgaagacttt
ttgcacaaggctatcagctctcatcttcagacctgcggctgttccatggtggttggcagc
aatcctgagaaagtcaacaagattgtgctcacgctgtgtttgttcctcacccctgccgag
agaaagtgttctcgactgtgtcacccggacggcttgtttaaatacgacactggcctgttt
gttcagggtctcctcaaggactccacagggagttttgtgttgccataccggcaggtgctc
tactccccctaccccaccacccacattgatgtggacattaacacggtgaagcagatgccc
ccctgccacgagcacatgtaccatcagcgacgctacatgcgctcggagctcagtgccctc
tggagggccgccagcgaggatgacatcagtccagacaacctcatcaacgcccaggactcc
ttcaccccagacctgaatatatttcaggacgtgatgcatagagatactctcgtgaagtcg
ttcatagatgaggtgttcctgttaaaaccaggtctgtctcttcggagtgtgtacttgtcc
cacttccttcttctgctaaacaggaaggccctgacactgctcagatatattgaggatgag
acgcagaaggggaaaaaaacgttcagatctctacgcaatctgaaaactgatttggattta
accgtggagggggatttaaacatcatcatggcaatggcggagaagctacgagcaggtctt
cactcctttgtttttgggaagtctttcttgaccagcgtgcaagagcgtgacctcctcctg
agcttctga
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