KEGG   Triplophysa rosa: 130561567
Entry
130561567         CDS       T09216                                 
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
  KO
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
Organism
tros  Triplophysa rosa
Pathway
tros04010  MAPK signaling pathway
tros04120  Ubiquitin mediated proteolysis
tros04140  Autophagy - animal
tros04144  Endocytosis
tros04620  Toll-like receptor signaling pathway
tros04621  NOD-like receptor signaling pathway
tros04622  RIG-I-like receptor signaling pathway
tros05132  Salmonella infection
tros05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:tros00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    130561567 (traf6)
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    130561567 (traf6)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    130561567 (traf6)
   04140 Autophagy - animal
    130561567 (traf6)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    130561567 (traf6)
   04621 NOD-like receptor signaling pathway
    130561567 (traf6)
   04622 RIG-I-like receptor signaling pathway
    130561567 (traf6)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    130561567 (traf6)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    130561567 (traf6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:tros04131]
    130561567 (traf6)
   04121 Ubiquitin system [BR:tros04121]
    130561567 (traf6)
Enzymes [BR:tros01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     130561567 (traf6)
Membrane trafficking [BR:tros04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    130561567 (traf6)
Ubiquitin system [BR:tros04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    130561567 (traf6)
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 zf-C3HC4_4 TRAF3_RING zf-RING_5 RING_XB3-XBAT31 DM U-box zf-TRAF_2 zf-RING_11 TRAF6_Z2
Other DBs
NCBI-GeneID: 130561567
NCBI-ProteinID: XP_057201983
LinkDB
Position
LG1:complement(28210630..28215921)
AA seq 538 aa
MACSDTEKSSLGGACCDSDYTSCAAAMEKERESYLSPTENPSTVSIPPDQQGYDVEFDPP
LESKYECPICLMGLRSAVQTPCGHRFCQSCITKSIRDTGQRCPVDNEVLLEEQLFPDNFA
KREILSLTVRCPNVGCGDKMELRQLEKHLSQCKFATEQCTQCHESVRIIYLDEHKTQHCL
QRSMTCPDCAGSFVYADRQIHEQMCPFASTVCDYCGMEFIRDQLAVHCDTDCLKAPVACT
FSTFGCREKMVRNDLAQHMQEFTQMHMRYMAEFLRTQTLNSSLNLPVISHFPSDERSASS
RAPEPCQCSQELVILRETVLELEGRLVRQDQQIRELCIHNETQKTQLTEVRRKLSSLEEA
TRELEAQQYQGVYVWRLENFSAHLHNQEAGQPVVLHSPPFYTGRPGYKLCLRLHLQTPNA
PRCSNYISLFVHTMQGEFDSQLSWPLQGSIRLAVLDQVEGQHHVEVMETKPDLQAFQRPT
VQRNPKGFGYVTFLHLQALQQRGFVKEDVLLVRCEVTPHSDASLRREGVQPRGPEPSP
NT seq 1617 nt   +upstreamnt  +downstreamnt
atggcttgcagtgacacagagaagtccagccttggtggtgcttgctgtgatagcgactac
accagttgcgcagcagctatggagaaagagagagagtcatatcttagcccaactgagaac
ccctcgaccgttagtatcccaccagaccaacaaggttatgatgtagagtttgaccctccg
ctagaaagcaagtatgaatgtccgatctgtttgatgggtctcaggtcggcagtacagaca
ccatgtggacatcgattctgccagtcgtgcatcacaaagtccatcagagacactgggcaa
agatgtccagttgacaacgaggtgctgctagaagaacagcttttccctgataactttgcc
aagcgagagatcctctcactgacagtccgctgccctaatgtagggtgcggtgataaaatg
gagttgaggcaattggaaaaacatttatctcagtgtaagtttgccacagagcagtgcact
cagtgtcacgagtctgttcgtataatctatctggatgagcataagacccagcactgctta
cagcgcagcatgacctgtcctgactgtgccgggagctttgtgtatgctgacagacagatt
cacgaacagatgtgtcctttcgctagtacagtgtgtgactattgtggaatggagtttatt
cgagatcagttggcagtgcattgtgacacagactgtcttaaagctcctgtagcctgtacc
ttcagcacttttggttgtcgtgaaaagatggtgagaaatgatctggcccagcacatgcag
gaatttacacagatgcacatgcgttacatggccgagtttttgcgcacccagacactcaat
agctcccttaatctgccggttatcagccacttcccgtcggatgaacgtagcgcctcctca
cgggcgccagaaccttgccagtgtagccaggagttggtgatcttacgggagacagtcttg
gagttagagggccgactggttcgtcaagaccaacagatccgagagctgtgcattcacaac
gagacgcagaaaacccagctcacagaggtacgtcgtaagctcagctcattagaagaggcc
acacgagagctggaggctcagcagtaccaaggcgtctacgtgtggcgcctggaaaacttc
tctgcccatctgcacaaccaggaggctggtcagcctgtagtccttcatagcccacctttc
tacacggggcggccaggttacaaactttgccttcggctgcacttgcaaacccccaacgct
ccccgctgttccaactacatctcgctttttgtacacactatgcagggggagtttgacagc
cagctctcctggcctttacagggctcgattcggctggcagtgctggaccaagtcgagggc
cagcaccatgtggaagtaatggagactaagccagacctgcaggcctttcaacggcccact
gtacagcgcaaccccaagggttttggctacgtcacttttcttcatctacaggctttgcag
cagcgtggctttgtgaaagaggatgtgctgttggtgcgatgtgaggtcacaccacactcc
gatgccagcctcaggcgtgagggggtccagcctcggggaccagaaccttcaccttga

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