Triplophysa rosa: 130565978 Help Entry 130565978         CDS       T09216                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism tros  Triplophysa rosa Pathway tros04115   p53 signaling pathway tros04145   Phagosome tros04148   Efferocytosis tros04350   TGF-beta signaling pathway tros04510   Focal adhesion tros04512   ECM-receptor interaction tros04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:tros00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     130565978 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     130565978 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     130565978 (thbs1b)    04148 Efferocytosis     130565978 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     130565978 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     130565978 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     130565978 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:tros04131]     130565978 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:tros00536]     130565978 (thbs1b) Membrane trafficking [BR:tros04131]  Endocytosis   Phagocytosis    Opsonins     130565978 (thbs1b) Glycosaminoglycan binding proteins [BR:tros00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    130565978 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C VWC2L_2nd EGF_3 TSP1_ADAMTS Laminin_G_3 TSP1_CCN cEGF EGF Laminin_G_2 Motif Other DBs NCBI-GeneID:  130565978 NCBI-ProteinID:  XP_057209161 LinkDB All DBs Position LG15:9819234..9830428 Genome browser AA seq 1172 aa AA seqDB search MKSTVIFLLLMLWTCESARVAESRDDNSVYDLFELVQVPRKNHGVTLVKGDDPYSPAYKI LNPDLIPPVPERTFRDLIDSIHAERGFLFLANFKQFKRTRGSILTVEKNDGSGPVFEIVS NGKANTLDIVYSTENKQQVVSIEEADLSVGHWKNITLFVQEDRVQFYVGCEEVNTAELDA SIQTILTQEIPGVASLRVGKGAVKDKFMGVLQNVRFVFGTTLEAILRNKGCQSSTHMTNI ITLENPINGSSPAIRTDYTGHKTKDLQMICGFSCDDLASMFKELKGLGVVVQELSNELRK VTDKNNMLMNRIGVHNGVCLHNGIMHKNKDEWTVDDCTECTCQNSATVCRKISCPLIPCA NATVPDGECCPRCGTPSDSAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSV QTRDCYLQECDKRFKQDGSWSHWSPWSSCSVTCGVGVITRIRLCNSPTPQMEGKDCQGEG RQTERCEKSPCPINGGWGPWSPWDACSTTCGGGVQSRKRLCNNPAPKYGGKECVGDAKST QLCNKQVCPIDGCLSNPCFAGAQCTSFPDGSWKCGKCPTGYTGNGIDCKDINECEKVPDA CFEFNGVHRCENTVPGYNCLPCPTRYTGPQPFGRGVEDATSKKQVCTPRNPCLDGSHDCN KNARCNYLGHFADPMYRCECRPGFAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNC PNLPNSGQEDYDKDGIGDACDNDDDDDGITDDRDNCPLVFNPRQYDYDRDDVGDRCDNCP YNSNPDQTDTDNNGEGDACAVDIDGDGILNENDNCPYLYNVDQKDTDMDGVGDQCDNCPL EHNPDQLDSDSDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDYDD DNDGIPDEKDNCRLVPNSDQVDSDGDGRGDACKDDFDDDSVPDIYDVCPENFDISETDFR KFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTDR DDDYAGFVFGYQSSSRFYVVMWKQITQTYWSHTPTKAQGYSGLSIKVVNSTTGPGEHLRN ALWHTGDTSGQVRTLWHDPKNVGWKDFTAYRWHLTHRPRTGHMRVVMYEGKKIMADSGRI YDKTYAGGRLGLFVFSQEMVYFSDLKYECRDM NT seq 3519 nt NT seq  +upstreamnt  +downstreamnt atgaagtcaacggtgatctttttgctattgatgctttggacctgcgagagcgcgagagtc gcagaaagtagagacgacaacagcgtttacgacctgttcgagctcgttcaagtgccccgg aaaaaccacggggtcactctggtaaaaggcgacgacccctacagtcccgcctacaagatc ctgaaccccgacctgatccccccggttcccgagagaaccttcagggaccttatcgattcc attcacgcggagaggggattcctgttcctggccaattttaaacagttcaagaggacgagg ggaagcatcctgaccgtggagaagaatgatggatccggacccgtattcgagatcgtctcc aacgggaaggcaaacaccctggacatcgtttactccaccgagaacaaacaacaggtggtg tccattgaggaagcggatttgtctgtgggacactggaaaaacatcactcttttcgtgcaa gaggacagggttcaattttacgtgggatgcgaggaggtgaatacggcggagcttgacgct tctatccagacaatcctcactcaggagatcccaggtgtggcgagcttaagggtcggcaag ggcgctgtgaaggacaagtttatgggtgtgctgcaaaacgtgcgctttgttttcggaacg acactggaggcgattctgaggaataaaggatgccaaagctccacacatatgacaaatatc atcacccttgaaaatcccataaatggatccagtcctgccatcagaactgattacactgga cacaaaacaaaagatctgcagatgatttgtggcttttcgtgtgacgatctggccagcatg ttcaaggaactcaaaggtcttggtgtggtggtgcaagagctgtccaatgaactccgcaaa gtaaccgataagaacaacatgctcatgaaccgcataggagttcataacggtgtctgtctt cacaacggaattatgcacaaaaacaaggacgaatggacagtagatgactgcacagagtgc acttgccagaactctgcaacggtgtgccggaagatctcgtgtcccctaattccatgtgca aatgccacggtgcctgatggggagtgctgccctcgatgtggaacgccgagcgactccgct gaggatggctggtccccctggtctgaatggacccattgttccgtgtcctgtggaaggggc attcagcagcgcgggcgctcctgtgaccgcatcaataacaactgcgagggcacgtcggtg cagacgagagactgctaccttcaggagtgcgacaagcgatttaagcaagatggcagctgg agtcattggtcaccatggtcatcctgctctgttacctgtggggtcggcgtcatcacacgc attcgtctttgtaactctccaacgccccagatggaaggcaaagattgccagggcgaaggc cggcaaacagagaggtgtgagaaatcgccatgtccaatcaatggtggttggggaccatgg tcaccttgggatgcttgttccaccacctgtggtggtggagtccaaagccgtaagcgtctt tgcaataatccagcacccaagtatggcggtaaagaatgcgtgggagatgcaaagagcacc cagctgtgcaacaaacaagtctgcccgattgatggatgtctttcgaatccgtgctttgct ggagcccagtgcacaagcttcccagatggatcctggaagtgtggaaaatgtcccacaggt tacactggaaatggaatcgactgcaaagacatcaatgagtgtgaaaaggttcctgatgct tgctttgaattcaatggagtccaccggtgtgagaacacagtgcccggctataactgcctg ccatgccccacacgctacaccggccctcagccgtttggacgaggagtggaggacgccact tctaagaaacaggtgtgcacaccccgtaatccctgcctcgacggcagccatgactgcaac aagaatgctcgctgcaactacctgggccatttcgcagatcccatgtaccgttgtgaatgc agacctggttttgctggaaatggacacatctgtggggaggacacggatcttgacggatgg cctaatgctgatcttgtgtgtgtggagaacgccacctatcactgcaagaaggataactgt cccaatcttccaaactctggccaagaagactatgacaaggatggaatcggcgacgcttgt gataatgacgacgacgacgatggcattactgacgacagggacaactgcccgctcgtcttc aacccaagacagtacgactacgaccgcgacgatgtgggagatcgctgtgataactgtcca tacaacagcaacccggatcagactgacactgacaacaatggtgaaggagacgcctgtgct gtggacattgatggagatggtattttgaatgaaaacgacaactgcccatatctgtacaat gtagaccagaaagacacagatatggatggagtgggtgaccagtgtgacaactgccctctg gaacacaacccagaccagctcgactctgactctgatcgtgttggagataaatgtgacagc aatcaagatatcgatgaagacggccaccaaaacaacctagacaactgcccatacattccc aatgcaaaccaggccgatcacgacaaggacggtaaaggtgacgcctgcgactacgatgat gataacgacggcatccctgatgaaaaagacaactgcagactggttcccaattcagatcaa gtggattctgatggcgatggccgtggagatgcctgtaaagacgactttgacgacgacagc gtcccagatatctatgacgtctgcccagagaactttgacattagtgagacagacttccgc aagttccagatggtacctctggaccccaagggcacttctcagatcgaccccaactgggtg gtccgtcaccagggcaaggaacttgttcagactgtcaattgcgaccccggtattgctgtc ggttttgatgagttcaactcggtagacttcagcggaaccttcttcatcaacacagacaga gatgatgactacgctggctttgtcttcggataccagtccagctctcgtttctacgtggtt atgtggaagcagatcacacagacctactggtcccacacgcctaccaaagcacagggttac tcagggctgtcaattaaagtggttaactccaccaccgggccgggcgagcacctgaggaat gctctctggcacactggagatacttcaggacaggtacgcactctgtggcacgacccaaag aatgttggatggaaggatttcactgcttacagatggcacctgacgcacagaccaagaact ggacacatgagagtggtcatgtatgaaggcaaaaaaatcatggcagattccggtagaatt tatgacaaaacatacgcaggaggaagactgggtctatttgtcttctcacaagagatggtt tacttctcagacctcaagtatgaatgcagagatatgtaa

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