Triplophysa rosa: 130570095
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Entry
130570095 CDS
T09216
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tros
Triplophysa rosa
Pathway
tros03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
130570095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tros03400
]
130570095
Enzymes [BR:
tros01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
130570095
DNA repair and recombination proteins [BR:
tros03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
130570095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
LIG3_BRCT
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
130570095
NCBI-ProteinID:
XP_057216196
LinkDB
All DBs
Position
LG19:6123438..6128911
Genome browser
AA seq
914 aa
AA seq
DB search
MSSAMMEGSSKSDATTQTSVAAQVPFINLCTVLEKIQKTKLRPDKSMILKDFIDSWRKFH
AALHKDNTSTTDSFYPAMRLIVPPFERERMAYGIKENMLAKLYIEVLGLPKNGPEANKLL
NYRAPTTSQGETGDFALTAYFVLKNRCTSKGNLSLKEVNDFLDSVAFNNASKQKDQVKKS
LLQVITQSSALEQKWLIRMILKDMKLGISKETILKVFHSDAPEFYNVTTDLDKVCRQLHD
PSVSLSEMSINLFSAFKPMLAAIANIGQIEKQMCNQPFYVETKLDGERIQLHKVGDVYKY
YTRNSYEYTQQFGASPLEGSLTPYIHNIFKPHVVNCILDGEMMAYNPTTETFMQKGSKFD
IKRLVDDSELQTCFCVFDVLLLNDEKFANEPLKKRYEILHTIFTPLKGRFQLVSKSEGRT
TQEVVNALNEAIDNREEGIMVKDRMSIYKPDKRGKEWLKIKPEYVDGLMDELDLLIVGGY
WGKGRRSGMLSHFLCAVAEEPSPGEKPTVFHTVCRIGSGYTLKELYDLGLKLAKHWKIYN
KNHPPASILCGTEKPEVYIEPQNSVIIQVKAAEIVSSEMYKTSCTLRFPRIERIREDKEW
HQCMNLTELSQYRSKASGKLASRHLHIQEGLPEKKKRKVAAKPKKTIGIIDHFRSQDLSA
VAKETDMFEGVEFCVINGNDERSKAELEKYVARAGGIVVQNPGRDTYCVIAAVQNLRVKN
LISSDQHDVVWAAWLVECLEKKQVVPWQPRHMIHMSPPTKEHFAKEYDKYGDSYYVDTNE
QLLRDVFGRIGQVDAEVSSVAQMEAKYTWDDLHTSIFRPFGAYFDRCADLGDPHTLIKGT
CLDTRALEFRFHGGSVVEELKEGISHVIVDDEGRILDLKTLRRLYRKKFKIVRESWVTDS
IKEGHVVDEIDYLV
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctgcaatgatggaaggttcttcaaaaagcgatgccacaacacagacctctgtt
gccgcacaagttcccttcatcaacctctgcacagttctggagaaaatccaaaagaccaaa
ctccgaccagataaatccatgatcctgaaggacttcatagattcatggaggaagttccat
gcggcgcttcacaaggacaatacaagcaccacagactcattctacccagccatgcgtctc
atcgtgcctccatttgagcgagagcgaatggcttacggtataaaagagaacatgctggcc
aaactttacattgaggttttaggtcttcctaagaatggacctgaagcaaacaaacttttg
aattacagagccccgactacatcccaaggggaaacaggtgactttgccctcacggcgtac
tttgtcctcaaaaacaggtgcactagcaaggggaatttaagcctcaaagaagtcaatgac
tttttggattcggtagcgttcaacaatgccagcaaacagaaggatcaggtgaagaaaagc
cttttacaggtgataacccagagttcagcattggagcaaaagtggcttattaggatgatc
cttaaggatatgaaacttggcattagcaaagagacgatactaaaggtttttcattcagat
gcaccggaattttacaacgtcacaacagatctggataaagtgtgcaggcaacttcacgac
ccatccgtgtcgctaagcgagatgtccattaatctgttttctgcttttaaaccaatgctg
gctgccattgccaacatcggacaaatcgagaagcaaatgtgcaaccagccgttctatgtt
gagacgaagcttgatggtgaacgcattcagttgcacaaagttggagatgtgtacaaatac
tacaccaggaactcttacgagtacacgcaacagttcggcgcctctccactggagggctct
ctcacgccgtacattcacaacatcttcaaacctcacgtggtgaactgcattctggatggc
gagatgatggcctataaccccacgactgagaccttcatgcagaaaggcagtaagtttgat
attaaaaggttggtggatgactcggaactgcaaacttgtttttgtgtgttcgatgtgctg
ttgttaaacgacgagaaatttgcaaacgaacccctcaagaagcgttacgaaattcttcat
accatcttcacccccctcaaaggccgtttccagctggtttctaaatccgaagggagaaca
acgcaagaagtggtgaacgctctcaacgaagccattgacaatcgggaggaggggattatg
gttaaggaccggatgtctatatacaaacccgataaacgtggtaaagaatggctgaagatt
aaaccggaatatgtcgatggtctgatggatgaactggatctgctcatagtgggtggctac
tgggggaaaggcaggagaagcggaatgttgtcgcattttctttgcgccgtggccgaggag
ccgagtcccggggagaagcccacggtgttccacacggtctgtcgcatcggatcgggctac
actttgaaagaactttacgatctcggactgaagttggccaagcattggaagatttacaac
aaaaaccatcctccggcgtccatcttgtgcggaacggagaagccagaggtttacatagaa
ccgcaaaactccgtcatcatacaagtcaaagcagcggagatcgtttccagcgaaatgtac
aagaccagctgcaccttacgcttccccagaatagaacgaatccgagaggataaggaatgg
caccaatgcatgaacttgaccgaactcagtcagtaccgttccaaggcttctggaaaactt
gcgtcccgacatctacacatccaagagggtctacctgaaaagaagaagcgaaaggttgcg
gccaagcccaagaagaccatcggtatcattgaccacttccgatctcaggatttatcagcc
gtcgccaaagagaccgatatgttcgaaggggtggagttttgcgtcatcaacggaaacgac
gagcgctcgaaggcggagctggagaagtacgtggcacgcgctggaggtatcgtcgttcag
aaccctggaagggacacgtactgcgtgatcgccgccgtgcagaacttgagggtgaagaac
ctcatctcttcagaccagcacgatgttgtgtgggctgcctggctcgtggagtgtctggaa
aagaagcaggttgtaccatggcagccgcgtcacatgatccacatgtcaccgcccacgaag
gaacatttcgcaaaggagtacgataagtacggagacagttattacgtcgatacgaatgaa
cagctgctcagggatgtgtttggaaggatcggacaagtagacgctgaggtttcgtctgtg
gcacagatggaagcaaagtacacttgggatgacttgcacactagcatttttaggcctttt
ggtgcatactttgaccggtgtgctgatttaggagatccgcatacgcttatcaagggtacg
tgtctggacacacgagccttagaattcagatttcatggtggttcagttgtggaggaactg
aaggagggaatctcgcatgtcatagtagatgatgagggaaggattctggacttgaagacg
ctaaggcgtctttataggaagaagttcaaaatcgttcgtgaatcatgggtgaccgattcc
atcaaagaaggccatgtggtggatgagattgactacctcgtataa
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