Treponema sp. OMZ 803: ABH09_04065
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Entry
ABH09_04065 CDS
T09263
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
trp
Treponema sp. OMZ 803
Pathway
trp03030
DNA replication
trp03410
Base excision repair
trp03420
Nucleotide excision repair
trp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
trp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABH09_04065 (ligA)
03410 Base excision repair
ABH09_04065 (ligA)
03420 Nucleotide excision repair
ABH09_04065 (ligA)
03430 Mismatch repair
ABH09_04065 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
trp03032
]
ABH09_04065 (ligA)
03400 DNA repair and recombination proteins [BR:
trp03400
]
ABH09_04065 (ligA)
Enzymes [BR:
trp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABH09_04065 (ligA)
DNA replication proteins [BR:
trp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABH09_04065 (ligA)
DNA repair and recombination proteins [BR:
trp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABH09_04065 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABH09_04065 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABH09_04065 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABH09_04065 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
RNA_pol_A_CTD
HHH
DNA_pol_lambd_f
DNA_ligase_ZBD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UTC53837
LinkDB
All DBs
Position
complement(885525..887450)
Genome browser
AA seq
641 aa
AA seq
DB search
MEKNTRIQELEALIKKHQDLYYNAEPEISDADFDLLWDELRSLDPRNALFATVPKDSADG
FPKAEHIIPMGSQEKAADPESFQKWAEKMSFSDFLVQYKLDGASMELQYEKGRLVRAVTR
GDGKIGDDITANVKKMQGVVLELKGDSAPTGTAPFSGGIRGEVLMTKEVLRRFYPDKKNC
RNAANGLMKRKDGSGSEHLEIICYDAAAGTVGKPFTETAPFTTETEKLNWLEAQGFLQVP
VTRCAGVREVIDYRAHVMDIRSTIPYDIDGLVVKNDRIDTADLSRARPEKQIAFKFSLEE
AVTVLRSVEWSESGATYTPIAVIDPVQLAGTTVKRANLCNPNMIAELNLKIGSRVLVTKR
GEIIPKIEALIENPASCVPIEQPCRCGSCGTELRDEGTRLYCPNPACPKLIHHRIEKWIN
TLDIQDFGTVLLKQLFDAQRLRSISDLYTITVEELAALERMGKKSAEKVYRALHAKREIS
LPTFIAGFDIEGIGRIMVEKLVDAGFDTLEKLLAASEEDFASVYQFGSVLAHTLTLGLRD
AKEEMLHLTGSGIIVIQAPVSAQGNLPLAGKSFCFTGELNTLKRKEAEAMVQAKGGTVKS
SVTKGLTYLVTNTPDSGSSKNKKAQKLGTVIITEEAFLKLF
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaatacacggatacaagagcttgaagcgctgataaaaaagcatcaggactta
tactataacgcggaaccggaaatttcggatgcggattttgatttattgtgggacgagctg
cgcagtctcgaccctcggaatgcgctttttgcaacagtacctaaggacagcgctgacggc
ttcccgaaggcggaacacattatcccgatggggagtcaagaaaaagcagcggatcccgaa
agtttccaaaaatgggcggaaaagatgtcgttctccgattttttggtacaatataaactg
gacggcgccagtatggagctgcaatacgaaaaggggcgactcgttcgggcagtaacacgg
ggcgacggcaaaatcggagacgatattactgcgaatgttaaaaagatgcagggagtcgta
cttgaactgaaaggcgattccgcccctaccggcacggctcccttttccggcggtatccgc
ggcgaagtgctgatgaccaaagaggtgctacgccgtttttatcccgataaaaaaaattgc
cggaatgcggcaaacgggttgatgaagcggaaggacggcagcggcagcgagcacctcgaa
attatttgctacgatgctgccgcaggaacagtcggaaagccctttaccgaaacggcgcct
ttcaccacagaaaccgagaaactcaactggcttgaagcgcagggtttcttacaggtgccg
gttacacggtgcgccggcgtccgggaagttatcgactaccgcgcccatgttatggatata
cgtagcactattccctacgacatcgacggccttgtcgttaaaaacgaccgcatcgatact
gcagacctcagtagggcgcggccggaaaaacagatcgcctttaagttcagtcttgaagaa
gcggttactgtattgcgcagcgtcgagtggagcgagtcgggcgctacctacacccccatc
gcagtcatcgatccggtacagttggcgggcacaaccgttaagcgggcaaacctctgcaac
ccgaacatgattgcggagctgaacctcaagatcggcagtagagtgctggtaaccaaacgg
ggggagattatccctaagatagaagcgctcatcgaaaaccctgcgtcatgtgtgcccatt
gaacagccgtgccgatgcgggagctgcggtactgaactccgcgatgaaggcacccgcctg
tactgccccaatccggcttgccctaagctcattcatcaccggatagaaaaatggatcaac
accctcgatattcaagactttgggacggtgctccttaaacagctctttgatgcacagcgt
ctccgctctatttccgatttatacaccattacggttgaagaacttgccgctttggaacgc
atgggaaaaaagtcggcggaaaaagtgtacagagcgcttcatgccaaacgcgaaatctcc
ctgccgacctttattgccggttttgatattgaaggcatcggccgtattatggtagaaaaa
ctggttgatgcaggctttgatactctcgaaaaactactcgcagcttcggaggaagacttt
gcctccgtgtaccaattcggcagcgtccttgcccatacgcttacgctcggcctccgcgat
gcaaaggaagaaatgctgcaccttaccggttcggggattatcgttattcaagcgcctgtc
tccgctcaaggaaatcttccgcttgcaggaaaaagcttttgctttaccggagagttgaac
acgcttaaaaggaaagaagctgaagcgatggtgcaggccaagggcggaacggtaaaatcg
tcggtaaccaagggacttacgtacctcgtgaccaatacccccgattccggttcgtcaaaa
aacaagaaggcgcagaaactcggcactgtgattatcaccgaagaggcatttttaaaactg
ttttaa
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integrated database retrieval system
