Trichoderma reesei RUT C-30: M419DRAFT_74990
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Entry
M419DRAFT_74990 CDS
T06031
Name
(GenBank) ATP-dependent DNA ligase
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
trr
Trichoderma reesei RUT C-30
Pathway
trr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
trr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
M419DRAFT_74990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
trr03400
]
M419DRAFT_74990
Enzymes [BR:
trr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
M419DRAFT_74990
DNA repair and recombination proteins [BR:
trr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
M419DRAFT_74990
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
BRCT
BRCT_2
DNA_ligase_A_C
DNA_ligase_IV
LIG3_BRCT
Bac_globin
Motif
Other DBs
NCBI-ProteinID:
ETS03876
JGI:
TrireRUTC30_1_74990
UniProt:
A0A024SHB3
LinkDB
All DBs
Position
Unknown
AA seq
996 aa
AA seq
DB search
MSRWTPKEEKAPDEDALREDDLQYGTSGMTEAEIAEKYPNKPRNHSKTLKFAELFKELFN
PLNDNKKQPSGPSIPASKRGPHGLTKLSPQEQRRHIIERFITRWRKEVGNDFYPALRLIL
PDKDRDRGVYGLKENAIGKLLVKLMKIDKNSEDGYNLLHWKLPGQTTGARLAGDFAGRCF
EVISKRPMRTQVGDMTIAEVNHQLDKLAASSGEAENLRIFETFYNRMNAEELMWLIRIIL
KQMKVGATEKTFLYLWHPDAEALFSVSSSLRRVCWELYDPEFRLEQDEAGIAVMQCFQPQ
LAQFQMPASFQKMIELLRPTEDDAEFWIEEKLDGERMQMHMMEDPNHPGGRRFRWWSRKA
KDYTYLYGDGLLDENSSLTRHLKNAFAPGVRNLILDGEMITWDMGVDKIVPFGTLKSAAI
AEQSNKSESNAAGHRPLFRVFDILYLNDKQLTQYTLRDRRNALQKAIRPVHRRLEIHEYT
PATSADAIEPLLREVVANASEGLVLKNPRSMYRLNSRNDDWLKVKPEYMSEFGESLDCVI
IGGYYGSGRRGGMLSSFLCGLRVSPNHIQAGANPEKCFSFFKVGGGFRTEDYAEIRHRTD
GKWMEWDPKNPPSEYIELGGGEAKQYERPDMWIRPKDSVVVSVKAASVGPSDQFARGFTL
RFPRFRRLRLDRSWDTALSLEEFQELKQRVESELKATEMTVEDRRRRNPKRIKKELVIAG
DDTAPPLFEGNKTKLFEGLEFCVLSESLKPYKKTKPQLEAIIKENGGSISQRAAAGTRMI
LIADKRVVKVASLIKDGNADIIRPRWIRDCLEQPDGGFLLPYEPGRHIFHATDALAEVAA
QNTDRYGDSYARDVDVEELRELMRDMPKLEDRQTFDKMLFLEQLEQHGKDVGSLRNFMFS
RCRVLLYLVDGAKESARDKWERYVRYGGGSVSRDADDDSVTHIVVLGDDVMEVGDVGDKL
RSKLSSRRKMPRLVSEGWVEESWRERTLLDEERYAV
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgagcagatggacgcccaaggaagaaaaagcccccgacgaagacgcgctgagggaggat
gacctgcaatatggcacaagtggcatgacggaggctgaaatcgctgaaaagtatcccaat
aagccgaggaaccactccaagacgctcaagttcgcagagctgttcaaggagctgttcaac
cccctcaacgacaacaagaagcagccttctggcccatcaattcccgcaagcaaaaggggc
cctcatggactgacaaagctatcgcctcaggagcagaggcggcacatcatcgagaggttc
atcaccagatggagaaaggaagtcggcaatgacttttaccctgctttgcgactcatcctg
ccggacaaggatcgagatcgcggcgtctacggcctgaaggagaatgccatcgggaagctt
ttggtgaaattgatgaagattgacaagaactcggaagatggctacaatctcttgcactgg
aagctgccaggccaaacaaccggcgcgcgtctggcgggtgactttgcgggccggtgcttc
gaggtcatctcgaaacggcccatgcgcacccaagtcggagacatgaccattgcagaggtc
aatcatcaactggataagctggctgcctcgagcggagaagctgaaaacctccgcatcttt
gaaaccttttacaatcgcatgaatgcggaagagcttatgtggctcatccgcatcattctg
aagcagatgaaggtgggcgctaccgagaagacgttcctatacctgtggcaccccgatgcc
gaggctcttttcagcgtgtcatccagtctcaggcgcgtatgctgggagctttacgacccc
gagtttcgactcgaacaggatgaggcgggcattgcagttatgcagtgcttccagccacag
cttgcccagttccagatgccggcctcgttccaaaagatgattgagctgctacggccgacg
gaagatgacgccgagttttggatcgaggagaagctcgacggcgagcgcatgcagatgcac
atgatggaggaccctaaccaccccgggggtcggagattccgctggtggtcgagaaaggcc
aaggactacacctatctctatggcgacggcttactggatgagaactccagcttgacgagg
catctcaagaacgcctttgcacccggcgtgcgtaacctgattctcgatggcgagatgatc
acctgggacatgggcgtggacaagattgtcccctttggtactctcaagtcggctgccatc
gcagaacaaagcaacaagtccgaatccaacgcggccggccaccgcccgctgtttcgcgtg
ttcgacatactgtatctcaacgacaagcagctgacgcagtacaccctgcgcgatcgccga
aatgcactgcaaaaggcaatcaggccggtccatcgccgactggaaatccacgaatacacg
cccgccacctcagccgatgccatcgagccccttctgcgcgaggtcgtcgccaacgcgtca
gaaggcctcgtgttgaagaacccacggtccatgtatcgcctcaacagccgcaacgacgac
tggcttaaggtaaagcccgagtacatgtccgagttcggcgagtcgctcgactgcgtcatc
atcggcggctactatggctcgggacgacgaggagggatgctgtcgagcttcctgtgcggc
ctccgcgtcagcccgaaccacatccaggccggcgccaacccagaaaagtgcttcagcttc
ttcaaagtcggcggcggcttccgcacagaggactacgccgagatcaggcaccgaacagac
ggcaagtggatggagtgggatcccaaaaacccgccgtccgagtacattgagctgggcggc
ggcgaggccaagcagtacgaacggcccgacatgtggattcggccaaaggactccgtcgtg
gtctctgtcaaggcggccagcgtcggtccgtcggatcagttcgcccggggcttcaccctg
cgattccctcggtttcgaagactacgactcgaccgcagctgggacacggccctgtctcta
gaggagtttcaagagctcaagcagagggtagaatcggaactcaaagcgaccgagatgaca
gtcgaagaccgcaggaggcgaaacccaaagcgaatcaagaaagagctcgtcatcgcgggc
gacgacacagctcctcccctattcgaaggcaacaagacgaagctcttcgaaggtctcgaa
ttctgcgtcctatccgaatcgctcaagccctacaaaaagaccaaaccacagctcgaagcc
atcatcaaagaaaacggaggctcaatatcgcaaagagccgccgcaggcacgagaatgatc
ctcatagccgacaaaagagtcgtcaaagtcgccagcctcatcaaagacggcaacgcagac
attatccggccccgctggatcagggactgtctggagcagcccgacggcggattcttgctc
ccgtacgagccggggcggcatatattccacgcgacggacgccctggcagaagtcgctgcg
cagaacacggatcggtacggggatagctacgcgcgcgatgtggatgttgaggagttgcgc
gagttgatgagggacatgccgaagctcgaggacaggcagacgtttgacaagatgctgttt
ctggaacaactggagcagcatggcaaggacgtcggttccctgcgaaactttatgttttcg
cgctgcagggtgctgctttacctcgtcgacggcgcaaaggagagcgcacgggataaatgg
gagaggtacgtccgctacgggggcggttccgtcagccgagatgcagacgacgactcggtg
acgcatattgttgtgctgggagacgatgtgatggaggttggcgacgtgggggacaagttg
cggtcgaagctgagttcgaggaggaagatgccgaggttggtgagcgaggggtgggtggaa
gagagttggcgggagaggacgcttttggacgaggagcggtatgctgtctga
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