Terriglobus roseus: Terro_3945
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Entry
Terro_3945 CDS
T02140
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
trs
Terriglobus roseus
Pathway
trs03030
DNA replication
trs03410
Base excision repair
trs03420
Nucleotide excision repair
trs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
trs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Terro_3945
03410 Base excision repair
Terro_3945
03420 Nucleotide excision repair
Terro_3945
03430 Mismatch repair
Terro_3945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
trs03032
]
Terro_3945
03400 DNA repair and recombination proteins [BR:
trs03400
]
Terro_3945
Enzymes [BR:
trs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Terro_3945
DNA replication proteins [BR:
trs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Terro_3945
DNA repair and recombination proteins [BR:
trs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Terro_3945
NER (nucleotide excision repair)
GGR (global genome repair) factors
Terro_3945
MMR (mismatch excision repair)
DNA ligase
Terro_3945
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Terro_3945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
BRCT_2
HHH_3
RNA_pol_A_CTD
DUF1936
Motif
Other DBs
NCBI-ProteinID:
AFL90153
UniProt:
I3ZLN5
LinkDB
All DBs
Position
4698011..4700242
Genome browser
AA seq
743 aa
AA seq
DB search
MSKANQADGTVPQQIDALRTEIVHHEHLYYVLDQPTLTDAQYDKLVNRLKALETEHPELV
TPDSPTQRVGGKVKDGFAKVAHSRPMLSLDNAYNEEELRAWADRVRGALHSSDVLEFVCE
YKLDGLSLAVEYVPGSHRSSHAGKQVTPAAYLDRAITRGDGTTGEDVTLNVRTMHTVPLS
IQGGKLAQLGMPDSFEVRGEVIMPHRSFQRLNRERKEAGQSEAANPRNAAAGTVRTVDPQ
IVARRGLEFCPYFLFVQRDDLYFQEKQHIFEKQSDALNVLTDLGFKVNPNRLLTSSIAEV
LSFIAEAETKRDTLGYEIDGIVIKVNAVAQQRRLGFTGKAPRWAIAYKFPARGAVTKLLN
VLFQVGRTGKLTPVAALDPVGIGGITVGRATLHNPDEIARLGVRIGDYVAVERGGDVIPK
ITEVVEDAEHPRGTKEIVFPTHCPKCKEPVVREDGEIDFRCVNASCPARLSEELLHYASR
GVMNIEGLGEAMVAQLLGHPLNDPVSLADVEAPDAPMSLDVRDAEMVEESNDTTADEPTR
TALVHTVADLYTLTTDDLLKLERVGPKTAESLIAQIDRSRSAPLYRVLLGLGIRHVGERT
AQDLADTFGSMDAIMTATEEELVRAEGIGPIVAKTIVDYFSIDKNRALVEALRAQGLQFT
AEKRVVGTALAGLTFVLTGTLPTLTRDEAKARIEAAGGKVSGTVSKKTSHVVAGEEAGSK
LDKARDLGVSVLSEQDLLEMLGK
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagcgaaccaggccgacggaaccgtaccgcagcagatcgacgcactgcgcacc
gagattgttcaccatgagcacctgtactacgtgctggatcagccgacgctgacggatgcg
cagtacgacaagctggtgaaccggctgaaggcgttggagacggagcatccggagctggtg
acgcccgattcgccgacgcagcgtgtgggcggcaaggtgaaggatggctttgctaaggtg
gcgcattctcgaccgatgctttcgctggataacgcctacaacgaagaggaattgcgcgca
tgggccgaccgtgtgcgtggcgcgctgcactcgagcgatgtgctggaatttgtctgcgag
tacaagctggatggtctttcgctggcagttgagtatgttccgggaagccatcgatcgtct
catgctgggaagcaagtgacccccgccgcctatctcgacagagccataacacggggtgac
ggtacgacgggagaggatgtaaccctcaacgtccgtacgatgcataccgttccgttgtcg
atacaaggcggcaagcttgcccaactaggtatgccggactccttcgaagtgcgcggagaa
gtgatcatgcctcaccgctctttccaaagactcaacagagagcgtaaagaagctggacag
tctgaagctgcaaatccccgtaacgccgctgcgggaacggtccgaacggtagatcctcag
atcgtggctcgaaggggcctagagttttgcccatacttcctctttgtgcagcgggacgat
ctttacttccaagaaaagcagcacatctttgaaaagcaatctgacgcgttgaatgtgctg
acggatcttgggttcaaagtaaatccgaataggctcctgacgtcgagtattgcggaggtt
ctttccttcattgcagaggctgagacgaagcgcgacacgcttggctatgagattgacggc
atcgtgatcaaggtgaacgcggttgcgcaacagcggcggcttggatttacgggcaaggca
ccgcgatgggcgattgcgtataagtttcctgcgcgtggtgcggtgacgaagctgctgaat
gttctgtttcaagtgggtcggacgggcaagctgacgccggttgctgcgctggatcccgtg
gggattggtggcattaccgttgggcgcgctacgctgcataaccccgacgagattgcgcgt
ctgggtgtgcgcattggcgactatgttgccgtggagcgtggcggcgatgtgattccaaag
atcaccgaggtggtcgaggacgcggagcatccgcgcggcacgaaggagattgtcttcccg
acgcattgccccaagtgcaaagagccggtggtgcgcgaggatggcgagatcgattttcgc
tgtgtgaatgcgagctgtccggcgcgattgagcgaagagttgctgcactatgcctcgcgt
ggcgtgatgaacattgagggcctgggcgaagcgatggtggcgcagttgctgggtcatccg
ctgaacgatcctgtctcgctggcggatgtggaagcgccggatgcgccgatgtcactggat
gtgcgcgatgcggagatggtggaagagtcgaacgacacgacggccgatgagccgacgcgg
acggcgctggtgcatacggttgcggatctttacacgttgacgaccgacgacctgctgaag
ctggaacgtgtggggccgaagactgcggagtcgttgattgcgcagattgaccggtcgcga
tctgcgccgctgtatcgggtgctgctgggtctgggcattcgtcatgtgggtgagcgcact
gcgcaagacctggccgatacgtttggcagcatggatgccatcatgaccgccacggaagaa
gagctggtgcgcgcggagggcattggaccgatcgttgcgaagacgatcgtcgattacttc
agcatcgacaagaatcgtgcgctggtggaagcgctgcgtgcgcagggtctgcagttcacg
gctgagaagcgcgttgtcggtaccgcgcttgcaggcctgaccttcgtgctgaccggcaca
ctgccgacgctgacgcgcgatgaagcgaaggctcgcatcgaggccgcgggaggcaaggtg
tccggcacggtgtcaaagaagacgagtcatgtggtcgctggagaagaggctggcagcaag
ctggataaggcccgggatctgggtgtgagcgtgttgagcgagcaggatctgctggagatg
ctgggaaaatga
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