Takifugu rubripes (torafugu): 101063179
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Entry
101063179 CDS
T02386
Symbol
lsm3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03018
RNA degradation
tru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101063179 (lsm3)
09123 Folding, sorting and degradation
03018 RNA degradation
101063179 (lsm3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tru03019
]
101063179 (lsm3)
03041 Spliceosome [BR:
tru03041
]
101063179 (lsm3)
Messenger RNA biogenesis [BR:
tru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101063179 (lsm3)
mRNA degradation factors
5'-3' decay
Lsm complex
101063179 (lsm3)
Spliceosome [BR:
tru03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
101063179 (lsm3)
Complex C
U2 snRNP components
101063179 (lsm3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
RimP_C
Glutaredoxin
Motif
Other DBs
NCBI-GeneID:
101063179
NCBI-ProteinID:
XP_003978554
Ensembl:
ENSTRUG00000023175
LinkDB
All DBs
Position
19:complement(18580951..18582604)
Genome browser
AA seq
102 aa
AA seq
DB search
MADEVEQQPATNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTVEIDEETYEELYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagttgaacagcaaccagccaccaacacggtcgaggagccgttagatctg
atcagactcagtctggatgagcggatctacgttaaaatgaggaacgaccgtgaacttcgg
ggtcggctgcacgcgtacgatcagcacctgaacatgatcctgggggatgtggaggagacg
gtgaccacggtggagatcgatgaggagacgtatgaagagctgtacaagtccacaaagagg
aacatccccatgctgtttgtgcgaggggacggcgtcgtcctcgtggctccgcccctccgc
gtgggttag
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