Tropicibacter oceani: QF118_11910
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Entry
QF118_11910 CDS
T09169
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
try
Tropicibacter oceani
Pathway
try03030
DNA replication
try03410
Base excision repair
try03420
Nucleotide excision repair
try03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
try00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QF118_11910 (ligA)
03410 Base excision repair
QF118_11910 (ligA)
03420 Nucleotide excision repair
QF118_11910 (ligA)
03430 Mismatch repair
QF118_11910 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
try03032
]
QF118_11910 (ligA)
03400 DNA repair and recombination proteins [BR:
try03400
]
QF118_11910 (ligA)
Enzymes [BR:
try01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QF118_11910 (ligA)
DNA replication proteins [BR:
try03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QF118_11910 (ligA)
DNA repair and recombination proteins [BR:
try03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QF118_11910 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QF118_11910 (ligA)
MMR (mismatch excision repair)
DNA ligase
QF118_11910 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QF118_11910 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
5_3_exonuc
PTCB-BRCT
HHH
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WGW02643
LinkDB
All DBs
Position
2459013..2461127
Genome browser
AA seq
704 aa
AA seq
DB search
MAEKTVEALSEDEARAELARLAQVLAQANQAYHTQDAPEISDADYDRLKQRNAAIEALFP
DLKRDDSPSDQVGAAPAEGFSKVRHAVRMMSLSNAFDDADIVDFDKSIRRYLGLAETDPL
HYTAEPKIDGLSLSLRYENGVLMQAATRGDGAEGENVTANARTIADIPHRLTGAPEVLEV
RGEVYMSHADFAALNARQAERGGKTFANPRNAAAGSLRQLDPAITRERPLRFFAYSWGEV
SAPLAQTQMGAIERLAELGFETNDLTVRCDSPQQMLAHYARIEEQRATLGYDIDGVVYKL
DDLALQGRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGV
VVSNATLHNEDYIAGRDSEGQPIRDGKDIRIGDWVQVYRAGDVIPKIADVDLSKRPEGAQ
PYDFPKTCPECGSDAIREEGDAVRRCSGGMICPAQAIEKLRHFVSRAAFDIEGLGARQVE
QFHTDGWVKEPADIFDLKQKYGSGLQQLKNREGWGEKSANNLFDAIDERRKIALGRVIFA
LGIRHVGESASNLLARHYGTWAQFEQAMVDAAALEGPAWDELLSIDGVGKVLAQSLVSAM
NQEAERASIDRLVAHLDIQPAERPATEGSPVAGKTVVFTGSLEKMTRAEAKARAESLGAK
VAGSVSKKTDIVVAGPGAGSKEKKALELGLTVLDEDGWLELIGG
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaaagaccgtagaggcgctgagcgaggacgaggcgcgtgccgaactggcccgg
cttgcgcaggttctggcgcaagccaaccaagcctatcacacgcaggatgcccccgagatt
tcggatgccgactatgatcggctgaaacagcgcaatgccgcgatcgaggcgctgtttccc
gatctgaaacgcgacgacagcccgtcagatcaggttggtgcggcccctgccgaaggcttt
tccaaggttcgtcatgctgtgcgcatgatgtcgctgtcgaatgccttcgacgatgccgat
atcgtggatttcgacaaatccatccgccgctacctggggctggccgagaccgatccgctg
cattacacggccgagcccaagatcgacgggttgtccctgtcgttgcgctatgaaaacggc
gtgttgatgcaggccgccacccgcggcgatggggccgagggcgaaaacgtcacggccaat
gcccgcaccatcgccgatatcccgcaccggttgaccggcgcgcccgaggttctggaagtg
cgcggcgaagtctacatgagccacgcggattttgccgcgctcaacgcccgccaggccgag
cgggggggcaagacctttgccaacccgcgcaatgccgccgccggcagcctgcgccagctt
gatcccgccatcacgcgcgaacgccccttgcgctttttcgcctattcctggggagaggtt
tccgccccgctggcgcaaacccagatgggcgcgattgaacggctggcggaattgggcttt
gaaaccaatgacctgaccgtccgctgcgacagcccgcagcagatgttggcgcattatgcc
cggatcgaggaacaacgcgccacccttggctatgacattgacggggtggtctacaaactc
gacgatctggcgttgcaggggcggctgggctttcgctcgaccacgccgcgatgggccatc
gcgcataaattcccggccgaactggcctggacccggctggaagccatcgacatccaggtc
ggccgcaccggcgcgctgtccccggtggcgcgcctgacgccggtgaccgtcggcggcgtc
gtggtgtccaacgccaccctgcacaacgaagactatatcgccgggcgcgacagcgaaggc
cagccgatccgcgacggcaaggacattcgcatcggcgattgggtgcaggtttaccgcgcc
ggcgacgtgatccccaagattgccgatgtcgacctgtcgaaacggcccgagggcgcgcag
ccctatgactttcccaagacctgcccggagtgcggctcggacgcgatccgggaagagggc
gacgcggtgcggcgctgttcgggcgggatgatctgcccggcccaggcgatcgagaagctg
cggcacttcgtatcgcgcgcggcctttgacatcgaagggctgggcgcccgccaggtcgaa
cagttccacaccgacggctgggtgaaggaacccgccgatatctttgatctgaaacagaaa
tacggcagcggcctgcagcagctgaagaaccgcgaaggctggggcgagaaatccgccaac
aacctgttcgacgccattgatgaacgccgcaagatcgcgcttggccgggtgatctttgcc
cttggcatccggcatgtgggggaaagcgcctcgaacctgttggcgcgtcactatggcacc
tgggcgcagttcgaacaggccatggttgacgccgccgcgctggaaggcccggcctgggac
gaactgctgtcgatcgacggggtcggcaaggtcctggcccagtcgctggtctctgccatg
aaccaggaagccgagcgcgcctcgatcgaccggctggtggcgcatctggatatccaaccc
gccgaacgccccgcgaccgagggcagcccggtggccggcaagaccgtggtctttaccgga
tcgctggaaaagatgacccgcgccgaggccaaggcccgcgccgaatccctgggcgccaag
gtggccggttcggtttcgaagaaaaccgatatcgtggtggcgggcccgggcgcgggcagc
aaggaaaaaaaggcgctggaactggggcttacggttctggatgaagacggctggctggag
ttgatcggcggatga
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