Treponema vincentii: GWP43_04100
Help
Entry
GWP43_04100 CDS
T06435
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
trz
Treponema vincentii
Pathway
trz03030
DNA replication
trz03410
Base excision repair
trz03420
Nucleotide excision repair
trz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
trz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GWP43_04100 (ligA)
03410 Base excision repair
GWP43_04100 (ligA)
03420 Nucleotide excision repair
GWP43_04100 (ligA)
03430 Mismatch repair
GWP43_04100 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
trz03032
]
GWP43_04100 (ligA)
03400 DNA repair and recombination proteins [BR:
trz03400
]
GWP43_04100 (ligA)
Enzymes [BR:
trz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GWP43_04100 (ligA)
DNA replication proteins [BR:
trz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GWP43_04100 (ligA)
DNA repair and recombination proteins [BR:
trz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GWP43_04100 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GWP43_04100 (ligA)
MMR (mismatch excision repair)
DNA ligase
GWP43_04100 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GWP43_04100 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
RNA_pol_A_CTD
DNA_pol_lambd_f
DNA_ligase_ZBD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QHX42767
UniProt:
A0A6P1XZ59
LinkDB
All DBs
Position
complement(880339..882264)
Genome browser
AA seq
641 aa
AA seq
DB search
MEKNTRIQELEALIKKHQDLYYNAEPEISDADFDLLWDELRSLDPRNALFATVPKDSADG
FPKAEHIIPMGSQEKAADPESFQKWAEKMSFSDFLVQYKLDGASMELQYEKGRLVRAVTR
GDGKIGDDITANVKKMQGVVLELKGNSAPTGTAPFSGGIRGEVLMTKEVLRRFYPDKKNC
RNAANGLMKRKDGSGSEHLEIICYDAAAGTVGKPFTETAPFTTETEKLNWLEAQGFLQVP
VTRCAGVREVIDYRAHVMDIRSTIPYDIDGLVVKNDRIDTADLSRARPEKQIAFKFSLEE
AVTVLRSVEWSESGATYTPIAVIDPVQLAGTTVKRANLCNPNMIAELNLKIGSRVLVTKR
GEIIPKIEALIENPASCVPIEQPCRCGSCGTELRDEGTRLYCPNPACPKLIHHRIEKWIN
TLDIQDFGTALLKQLFDAQRLRSISDLYTITVEELATLERMGKKSAEKVYRALHAKREIS
LPTFIAGFDIEGIGRIMVEKLVDAGFDTLEKLLAASEEDFASVYQFGSVLAHTLTLGLRD
AKEEMLHLTGSGIIVIQAPVSAQGNLPLAGKSFCFTGELNTLKRKEAEAMVQAKGGTVKS
SVTKGLTYLVTNTPDSGSSKNKKAQELGTAIITEDEFLKLF
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaatacacggatacaagagcttgaagcactgataaaaaagcatcaggactta
tactataacgcggaaccggaaatttcggatgcggattttgatttattgtgggacgagctg
cgcagtctcgatcctcggaatgcgctttttgcaacagtacctaaggacagcgctgacggc
ttcccgaaggcggaacacattatcccgatggggagtcaagaaaaagcagcggatcccgaa
agtttccaaaaatgggcggaaaagatgtcgttctccgattttttggtacaatataaactg
gacggcgccagtatggagctgcaatacgaaaaggggcgactcgttcgggcagtaacacgg
ggcgacggcaaaatcggagacgatattactgcgaatgttaaaaagatgcagggtgtcgta
cttgagctgaaaggcaattccgcccctaccggcacggcgcccttttccggcggtatccgc
ggcgaagtgctgatgaccaaagaggtgctacgccgtttttatcccgataaaaaaaattgc
cggaatgcggcaaacgggttgatgaagcggaaggacggcagcggcagcgagcacctcgaa
attatctgttacgatgccgccgcgggaacagtcggaaagccctttaccgaaacggcgcct
ttcaccacagaaaccgagaaactcaactggcttgaagcgcagggtttcttacaggtgccg
gttacgcggtgcgccggcgtccgggaagttatcgactaccgcgcccatgttatggatata
cgtagcactattccctacgacatcgacggccttgtcgttaaaaacgaccgcatcgatact
gcagacctcagtagggcgcggccggaaaaacagatcgcctttaagttcagccttgaagaa
gcggttactgtattgcgcagcgtcgagtggagcgagtcgggcgctacctacacccccatc
gcagtcatcgatccggtacagctggcgggcacaaccgttaagcgggcaaacctctgcaac
ccgaacatgattgcggaactaaaccttaagatcggtagtagagtgctggtaaccaaacgg
ggggagattatccctaagatagaagcgctcatcgaaaaccctgcgtcatgtgtgcccatt
gaacagccgtgccgatgcgggagctgcggtactgaactccgcgatgaaggcacccgcctg
tactgccccaatccggcttgccctaagcttattcatcaccggatagaaaaatggatcaac
accctcgatattcaagactttgggacggcgctccttaaacagctctttgatgcacagcgt
ctccgctctatttccgatttatacaccattacggttgaagaacttgccactttggaacgc
atgggaaaaaagtcggcggaaaaagtgtacagagcgcttcatgccaaacgcgaaatctcc
ctgccgacctttattgccggttttgatattgaaggcatcggccgtattatggtagaaaaa
ctggttgatgcaggctttgatactctcgaaaaactactcgcagcttcggaggaagacttt
gcctccgtgtaccaattcggcagcgtccttgcccatacgcttacgctcggcctccgcgat
gcaaaggaagaaatgctgcaccttaccggttcggggattatcgttattcaagcgcctgtc
tccgctcaaggaaatcttccgcttgcaggaaaaagcttttgctttaccggagagttgaac
acgcttaaaaggaaagaagcggaggcaatggtgcaggccaagggcggaacggtaaaatcc
tcggtaacaaagggacttacgtacctcgtgaccaatacccccgattccggttcgtcaaaa
aacaagaaggcgcaggaactcggcactgcgattatcaccgaagacgagtttttaaaactg
ttttaa
DBGET
integrated database retrieval system
