Thiothrix subterranea: HMY34_12030
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Entry
HMY34_12030 CDS
T07831
Name
(GenBank) efflux RND transporter periplasmic adaptor subunit
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
tsb
Thiothrix subterranea
Pathway
tsb01501
beta-Lactam resistance
tsb01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
tsb00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
HMY34_12030
01503 Cationic antimicrobial peptide (CAMP) resistance
HMY34_12030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tsb03036
]
HMY34_12030
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tsb02000
]
HMY34_12030
01504 Antimicrobial resistance genes [BR:
tsb01504
]
HMY34_12030
Chromosome and associated proteins [BR:
tsb03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
HMY34_12030
Transporters [BR:
tsb02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
HMY34_12030
Antimicrobial resistance genes [BR:
tsb01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
HMY34_12030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HlyD_D23
HlyD_3
Biotin_lipoyl_2
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
QQZ29441
LinkDB
All DBs
Position
2447531..2448640
Genome browser
AA seq
369 aa
AA seq
DB search
MLSIVGEMLAVARAAEIVRVEAVTSLSSSVLGSTVIPYREVTLSAQVPGAVKFVAGEAGS
GFNQGDVIVRIDESQLTAKRNAVLAQIAIAQATVQNSQAQYTRELISPRSKDIGAMPGFG
LPAMFDMTMVRPFADSMMGNYDSDMGRYSDLMSSATGVSQAQSNLQQAMSQLQEIDAALG
DAKSVAPFEGIVLEKLVEVGDTVQPGQPLIKFGYVKYKRLQADVPSGLVGNLRVGMIIPA
KLDSKTTLMVKLSQIYPVADPSRHTVTVKFDLPVDAVAAPGMYAEVYLPETQTGDAKIVV
IPKTALLRGRSLPSVLVVKNDNTSELRLVRLGAEQEDGKVEVVSGLSADERVVDKPPATA
SSGWMPPVE
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgcttagcattgtcggtgaaatgctggcggttgcgcgagctgccgaaattgtgcgcgtg
gaagcggtgacgtcgttgtctagctcggtcttggggagtacagttatcccttatcgcgag
gtcactttgtccgctcaagtgccaggagcggttaaatttgtggcgggtgaggcaggctct
ggctttaatcaaggtgacgtgattgtgcgcatagatgagtcgcaattaaccgcaaagcgc
aatgcggtgttggcgcaaattgcgattgctcaggcaacggtacaaaattctcaggcgcag
tatacccgtgagctaatctcaccgcgcagcaaagacattggtgcgatgccgggttttggt
ttgcctgccatgtttgatatgacgatggtgcgcccgtttgccgattccatgatgggtaat
tatgattcggatatgggacgttattcggatttaatgagcagtgccactggcgtttcgcag
gcgcaaagcaatttgcagcaagcgatgtcgcagttgcaagaaattgatgcggccttgggt
gatgccaagtccgttgcgccgtttgaagggattgtgctggaaaagctggtcgaagttggc
gatacggtgcagccggggcagcccttaattaagtttgggtatgttaaatacaagcgtttg
caggcggatgtgccttctggcttggtgggtaatttgcgggtggggatgattattcctgct
aaactagacagtaagaccacgcttatggtcaagctctcgcaaatttatccggttgccgac
cccagccgccatacggtgacggtaaaatttgatttgcctgttgatgcagtagcagcgccg
ggtatgtatgctgaggtatacttgccggaaacgcaaacgggtgacgctaaaattgtggtt
attcccaaaacagccttgctccgggggcgtagcctgccaagcgtattggttgtgaaaaat
gataatacctccgaattgcgcttggtaagactgggtgctgaacaagaagatggtaaggta
gaagtggtttccggtttaagtgcagacgagcgggtggtggataaaccaccggctacggcc
tcctccggttggatgccaccggtagaataa
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