Thermus scotoductus: TSC_c17960
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Entry
TSC_c17960 CDS
T01414
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tsc
Thermus scotoductus
Pathway
tsc03030
DNA replication
tsc03410
Base excision repair
tsc03420
Nucleotide excision repair
tsc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TSC_c17960 (ligA)
03410 Base excision repair
TSC_c17960 (ligA)
03420 Nucleotide excision repair
TSC_c17960 (ligA)
03430 Mismatch repair
TSC_c17960 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsc03032
]
TSC_c17960 (ligA)
03400 DNA repair and recombination proteins [BR:
tsc03400
]
TSC_c17960 (ligA)
Enzymes [BR:
tsc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TSC_c17960 (ligA)
DNA replication proteins [BR:
tsc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TSC_c17960 (ligA)
DNA repair and recombination proteins [BR:
tsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TSC_c17960 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TSC_c17960 (ligA)
MMR (mismatch excision repair)
DNA ligase
TSC_c17960 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TSC_c17960 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
DNA_ligase_ZBD
HHH
RNA_pol_A_CTD
BRCT_2
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
ADW22410
UniProt:
E8PLZ1
LinkDB
All DBs
Position
complement(1699649..1701673)
Genome browser
AA seq
674 aa
AA seq
DB search
MTLEEARKRINELRDLIRYHNYRYYVLDAPEISDAEYDRLLRELKELEERFPELKSPDSP
TEQVGAKPLEATFRPIRHPTRMYSLDNAFTLEEVRTFEERIERALGRKGPFVYTVEHKVD
GLSVNLYYEEGILVWGATRGDGETGEEVTQNLLTIPTIPRRLKGVPERLEVRGEVYMPIE
AFLRLNEELEEKGEKIFKNPRNAAAGSLRQKDPRITARRGLRATFYALGLGLEESGLKTQ
LDLLHWLREKGFPVEHGFARAEGAEGVERIYQGWLKERRSLPFEADGVVVKLDELSLWRE
LGYTARAPRFAIAYKFPAEEKETRLLQVVFQVGRTGRVTPVGILEPVFIEGSEVSRVTLH
NESYIEELDVRIGDWVLVHKAGGVIPEVLRVLKEKRTGEERPIRWPETCPECGHRLVKEG
KVHRCPNPLCPAKRFEAIRHYASRKAMDIGGLGEKLIEKLLEKGLVKDVADLYRLKEEDL
VGLERMGKKSAGNLLRQIEESRSRGLERLLYALGLPGVGEVLARNLAAHFGTMDRLLEAS
LEELLQVEEVGELTARGIYETLQDPAFRDLIRRLKEAGVEMEAKERGEEALKGLTFVITG
ELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGEAPGSKLEKARALGVPTLTEEELYRL
IEERTGKPVETLAS
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgaccctggaagaggcacgcaaacggatcaacgagctccgggacctcatccgctaccac
aactaccgttactacgtcctggatgccccggagatttccgatgccgaatacgaccggctt
ttgagggagcttaaggagttggaggaacgctttcccgagctcaaaagcccggattccccc
acggagcaagtgggggctaagcccctcgaggccaccttccgccccatccgccatcccacc
cgcatgtactctctggataacgccttcaccctggaggaggtcaggacctttgaggagcgg
atcgagcgggccttggggaggaaggggcccttcgtgtacacggtggagcacaaggtggat
ggcctttccgtgaacctctactacgaggaagggattctggtatggggggccacccggggg
gacggggaaacaggggaggaggtcacccagaacctcctcaccatccccaccattccccga
aggcttaaaggggtaccggagcgcctcgaggtccggggcgaggtgtacatgcccatagag
gccttcctccgcctcaacgaggagctggaggaaaagggagagaagatcttcaaaaacccc
agaaacgccgccgccggctccctcaggcagaaggacccccggatcaccgcaaggaggggc
ctcagggccaccttctacgccctgggcctcggcctggaggaaagcgggctcaagacccag
ctggacctccttcactggcttagggagaaggggtttcccgtggagcacggcttcgcccgg
gcagaaggggcagagggggtggaaaggatctaccagggctggctgaaggagcggcgaagc
ctgccctttgaggcggatggggtggtggtgaagctggatgagctttccctctggcgggaa
ctggggtacaccgcccgggccccgcgctttgccatcgcctacaagttccccgcggaggag
aaggaaacccgcctgcttcaggtggtcttccaggtggggcgcacgggcagggtgacgccg
gtgggcatcctggagcccgtcttcattgagggaagcgaggtcagccgggttaccctgcac
aatgaaagctacattgaggagctggacgtgcgcatcggggactgggtcctggtgcacaag
gcggggggggtgatccccgaggtcctcagggtcctgaaggagaagaggaccggggaggag
aggcccattcgctggccggaaacctgtcccgagtgcggccaccgcctggtcaaggagggc
aaggtgcaccgctgccccaatcccttgtgcccggccaagcgctttgaggccatccgccac
tacgcctcccgcaaggccatggacatcgggggtcttggggagaagctcattgagaagctc
ctggaaaagggcttggtgaaggatgtggccgacctttaccggcttaaggaggaggacctg
gtgggcctcgaacgcatggggaagaagagcgcggggaaccttctccgccagattgaggag
agccggagccggggcctggagcggctcctctatgctctgggactgccgggggtgggggag
gtgctggcccgcaacctggcagcccacttcggcaccatggaccgcctcctcgaggccagc
ctggaggaactcctccaggtggaggaggtgggggaactcaccgcccgggggatttacgaa
accctgcaggaccctgccttccgggacctgataaggcgcctcaaggaggctggggtggag
atggaggccaaggaacggggggaggaggctttaaagggccttaccttcgtcatcaccggg
gagctttcccgcccccgggaggaggtgaaggccctcttgaggcgcctgggggccaaggtg
acggattccgtgagccgcaagaccagctacctggtggtgggggaggctccggggagcaag
ctggagaaggcccgggccctgggggtgcccaccttgacggaggaggagctgtacaggctc
atagaggagcgcacggggaagcctgtggaaaccttagcttcctag
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