Tsukamurella sp. PLM1: MTP03_33930
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Entry
MTP03_33930 CDS
T09545
Name
(GenBank) hypothetical protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tsd
Tsukamurella sp. PLM1
Pathway
tsd03030
DNA replication
tsd03410
Base excision repair
tsd03420
Nucleotide excision repair
tsd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MTP03_33930
03410 Base excision repair
MTP03_33930
03420 Nucleotide excision repair
MTP03_33930
03430 Mismatch repair
MTP03_33930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsd03032
]
MTP03_33930
03400 DNA repair and recombination proteins [BR:
tsd03400
]
MTP03_33930
Enzymes [BR:
tsd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MTP03_33930
DNA replication proteins [BR:
tsd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MTP03_33930
DNA repair and recombination proteins [BR:
tsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MTP03_33930
NER (nucleotide excision repair)
GGR (global genome repair) factors
MTP03_33930
MMR (mismatch excision repair)
DNA ligase
MTP03_33930
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MTP03_33930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BDH58454
LinkDB
All DBs
Position
complement(3090609..3091733)
Genome browser
AA seq
374 aa
AA seq
DB search
MTTKLLDIRVNVGRTGRVTPYAYMAPVTVAGSTVEFATLHNASEVERKGVLIGDTVTIRK
AGDVIPEVLGPVVDLRDGSERAFVMPVTCPECGATLAPSKEGDADIRCPNTEACPAQLRE
RLFYLAGRTCFDIEGLGYEAASALTASEVLHNEGDVFSLTADSLAQVPLFTNDDGALSAN
AQRLLTNLEVAKNKPLWRVLVGLSIRHVGPSAARALAQEFGSLDAIAEADVDRLAEVDGV
GRTIAEAVIDWFTVQWHREIVEKWRAAGVRLEDERDASVQRTLEGLSIVVTGSLQNYSRD
EAKEAILVRGGKAAGSVSKKTAFVVIGDAPGSKADKAEQLGVPILDEDGFTTLLTEGPDA
VRPPAVEEPAPEAE
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccaagctgctcgacatccgggtcaacgtgggccgcaccggccgggtcaccccg
tacgcctacatggctccggtcaccgtcgccgggtccacggtggagttcgccacgctgcac
aacgcatccgaggtcgagcgcaagggcgtgctcatcggcgacaccgtgaccattcgcaaa
gccggggacgtgatcccggaggtcctcggccccgtcgtcgatctgcgcgacggctccgag
cgcgcgttcgtcatgccggtgacgtgccccgagtgcggcgcgacccttgcgccgtcgaag
gagggcgacgccgacatccggtgtcccaacacggaagcctgccccgcgcagctccgcgag
cggctcttctatctggccgggcgcacctgcttcgacatcgaggggctcggctacgaggcc
gcctcggcgctcaccgcatcggaggtgctgcacaacgagggcgacgtcttctccctcacc
gcggattcgctcgcccaggtcccgctgttcaccaatgacgacggtgcgctgtcggcgaac
gcgcagcggctgctcaccaacctcgaagtggcgaagaacaagccgctgtggcgcgtgctc
gtgggcctgtccatccggcacgtcgggccgtcggcggcgcgggcgctcgcgcaggagttc
ggcagcctcgacgcgatcgccgaggccgatgtcgaccgcctggccgaggtcgacggggtg
ggccgcacgatcgccgaggcggtgatcgactggttcaccgttcagtggcaccgtgagatc
gtcgagaaatggcgcgccgccggcgtccgcctcgaggacgagcgggacgcgtcggtgcag
cgcacgctcgaggggctgtccatcgtggtcaccgggtcgctgcagaactactcgcgggac
gaggccaaggaggccatcctggtgcgcggcggcaaggccgcgggcagcgtctcgaagaaa
acggccttcgtcgtgatcggcgacgcgcccggctccaaggccgacaaggcggagcagttg
ggcgtgccgatcctcgacgaggacggcttcaccacgcttctcacggaggggccggacgcg
gtgcggccgccggcggtcgaggagcccgcgccggaggcggaatga
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