Trachymyrmex septentrionalis: 108746596
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Entry
108746596 CDS
T11226
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tsep Trachymyrmex septentrionalis
Pathway
tsep03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tsep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
108746596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsep03400
]
108746596
Enzymes [BR:
tsep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108746596
DNA repair and recombination proteins [BR:
tsep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
108746596
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DNA_ligase_IV
BRCT
BRCT_2
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
108746596
NCBI-ProteinID:
XP_018338962
LinkDB
All DBs
Position
Unknown
AA seq
903 aa
AA seq
DB search
MAIALEAKIEFKQLCDTLEDVAKTHDVKKKEQILQTFIDTCRNVGDKLKIEYPESDVSLY
PILRLILPDLERQRGPHYLKQVSLANLYAHIYGFAKNSDSYKKLANYRNLLSSEKFIGND
FADQAYCVLNKKLPRISTGFTIARINEFLDSISGRNTNVTRQQKVETFRVLFRQITGFEM
KWITRIILKDLRLGVGTQRILHIYHPNANDKFLVTNDLREICNQLHNPKIKLKECGIQIF
SHFKPMLLERCNIENIGKLFRDNDSYYVQSKYDGERSQLHMKNGKFKYLTRRGYDITSKY
GYGEIGSSGFLTAVFTRCLNPNCHSFILDGELMAWHKEKRIFSTKGMNLDVKNLSASSRH
QPCFVVFDVILHNDILLVDTPYKDRLKLLNDIFTEEEGSLTICQSTLISNREELIKEFNT
CLRNNEEGLVIKKCNMKYKPNVRDGNGCYKIKAEYSDNLVQDIDLIILGGNYGEGKYTGI
IKSFMMGVVAPANKEGENPSQFFSIVSVSTGIGDEMLRHLQTKLAPYWIKERPENIVGPK
KNQPDMWIHPEHSIILTIRATEMVRSNEYPIGYSLRFPRVTNVRMDRPWYSSCTTLELLS
LTKDEGMIQKLTKREATLHDIDRVPVSKLQKIASRSKSIEHNVYDKRVVPLTRLLDGKEI
CVINGTDELSKEQIEEILQQHSARIVQNPINTTFCVIVSNNRTMRGKEVVNSGKYDVVTL
DWVKRVTNINRSDWTSLIDFLPWELLCSRDITRRQVMKNYDEYYDSFVVDADEESLKRSF
GKIAEPIIFELTGNPFTSEQEKEMNKELFGSASPYSLFGDIIGFFENQSCNVKFKFRFMS
GTIKDNIDSSVTHIFVEDNETNAIVRDTKAYKQISTKIVKCKWIEECFRNGRICEITDYL
ITQ
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggctattgctttagaggctaaaattgagtttaaacaattatgcgatacattggaagac
gttgccaagacacatgatgtaaaaaagaaagaacaaattttgcaaacatttattgatacg
tgtcgaaatgttggcgataaactgaaaatagaatatcctgaatcggatgtgtcgctctat
cctatcttaagattgatactacccgatcttgaacgacagcgtggaccgcattatttgaag
caagtttcgctggcaaatctttacgctcacatatacggtttcgcaaaaaatagcgacagt
tataaaaaattagcaaattatcgaaatttactctcatcggaaaaatttataggaaatgat
ttcgctgatcaagcttactgcgtattgaataaaaagttacctcgaatcagtactggattc
acgatcgcacggattaacgagttccttgacagtatctctggaagaaacacgaatgtaacg
aggcaacaaaaagttgaaacgtttcgagtacttttccgacaaattacaggatttgagatg
aagtggataacgcgtatcattcttaaagatttacgacttggtgtaggaacgcaaagaata
ctgcacatctatcatcccaacgcgaatgataaatttcttgtgacgaatgatctacgcgag
atttgtaaccagttacataatcctaagatcaaattaaaagaatgcggcatacaaatattt
tcacattttaagccgatgctcttagagagatgcaatatcgaaaatatcggcaagttattt
cgggacaatgactcgtactatgttcaaagtaaatacgacggcgagagatcgcaactccat
atgaagaacggaaaatttaaatacttgacacgtagaggatacgacattacaagcaagtat
ggatacggagaaattggatcttcaggttttttaaccgcggtatttacgcggtgtttgaat
ccgaattgtcattcttttatattggatggagaattaatggcttggcataaagagaaaaga
atatttagtacaaaaggtatgaatctcgacgtcaaaaatttatcggcgagcagtcgacat
cagccgtgtttcgttgtatttgatgtgattctgcataatgacatcttgctcgttgataca
ccttataaagacagattaaagcttctcaatgatatattcaccgaagaggaaggttctcta
actatatgtcaatctactttaatttcaaacagggaagaattgataaaggaattcaataca
tgcctccgtaataatgaagaaggacttgttataaagaaatgtaatatgaaatataaacca
aatgttcgagatggcaacggttgttataagattaaagcagagtattctgacaatttagta
caagatatagacctcatcatacttggcggtaattacggagagggcaaatatacaggaata
attaaaagctttatgatgggtgttgtcgcaccagcgaacaaagaaggagaaaatccatcc
caatttttctccatcgtatctgtaagcactggaataggagatgaaatgttacgtcatctt
caaacaaaacttgcgccatattggatcaaggaacgtcctgaaaatattgtaggtcccaag
aaaaatcagccagatatgtggattcatccagaacattctataattttaacgatacgagcg
actgagatggtacgtagtaatgaatatccaattggatacagtctacgatttcctagagtt
acgaatgtaaggatggataggccctggtacagttcatgcactactctcgaacttctatcg
ttgaccaaagatgaaggaatgattcaaaagttaaccaagcgggaagctactctgcatgat
atcgaccgagtaccagtctctaaattacaaaagatagcaagtcgaagtaaatcaattgaa
cataacgtgtatgataagcgcgtagtaccactcacgcgactattggatgggaaagaaatt
tgcgtgattaatggtaccgatgaattatcgaaagagcaaattgaggaaatactgcagcaa
catagcgcaagaattgttcagaatccaattaatacgactttttgcgtgatagtaagcaat
aatagaacgatgcgagggaaagaagtagtaaacagtggaaaatacgatgttgtaactttg
gattgggttaaacgtgtcacaaacatcaatcgatccgactggacctcattaattgatttt
ttaccatgggaactattatgcagccgagacattactagacgccaagttatgaaaaattat
gacgaatattatgatagttttgttgttgacgccgatgaggagagtttaaagcgttcattc
ggcaagattgcggagccgattatttttgagcttacgggcaatccgtttacaagtgaacaa
gaaaaagaaatgaacaaagaattgttcgggagtgcatcgccttattcgttatttggagat
ataattggattctttgaaaatcaatcgtgtaatgttaaatttaaattccgtttcatgtca
ggtacaattaaagacaatatcgacagttccgttacgcatatctttgtagaagataacgag
acgaacgctattgtaagagacacgaaagcctacaagcaaatatctacaaaaatcgttaaa
tgtaaatggatcgaggaatgtttccgaaatggccgaatatgtgaaattacagattaccta
atcacccaataa
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