Turicibacter sanguinis: HLK68_06900
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Entry
HLK68_06900 CDS
T06584
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tsg
Turicibacter sanguinis
Pathway
tsg03030
DNA replication
tsg03410
Base excision repair
tsg03420
Nucleotide excision repair
tsg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HLK68_06900 (ligA)
03410 Base excision repair
HLK68_06900 (ligA)
03420 Nucleotide excision repair
HLK68_06900 (ligA)
03430 Mismatch repair
HLK68_06900 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsg03032
]
HLK68_06900 (ligA)
03400 DNA repair and recombination proteins [BR:
tsg03400
]
HLK68_06900 (ligA)
Enzymes [BR:
tsg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HLK68_06900 (ligA)
DNA replication proteins [BR:
tsg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HLK68_06900 (ligA)
DNA repair and recombination proteins [BR:
tsg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HLK68_06900 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HLK68_06900 (ligA)
MMR (mismatch excision repair)
DNA ligase
HLK68_06900 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HLK68_06900 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
5_3_exonuc
DUF4908
Zn_Ribbon_TF
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QJS18995
LinkDB
All DBs
Position
1408715..1410703
Genome browser
AA seq
662 aa
AA seq
DB search
MEKLRIEELTKLLTQYNHEYYVLDKPSVSDREYDRLMQELMELEEKHPELKSNTSPTVRV
GGKVLEGFNKIEHEKPMLSLSNAFNEDDLRDFDTRVKKVSPKATYVCELKIDGLAVTLHY
NNGAFVKGATRGDGVIGEDISENLKTIKTIPLHINNNQPLEVRGEVYMSKATLEKLNEER
AAKGEELFANPRNAAAGSLRQLDSRIAAKRNLAMFCYAVPSAADLGCTTHEESLQKISEL
GFNVNPNRQVCENIDEVLEYINRWTNARFDLPYEIDGIVIKVNQLQEQDKLGNTVKSPRW
AIAYKFPAEEVETILTDIIFTVGRTGMVTPNAVLEPVRVAGTRVSRATLHNEDYVTSRDI
RINDRVIIRKAGEIIPEVVKPVIDARNGDEIPFEMISTCPRCSSELVREAGEADYYCLNI
DCPARIVESLSHFVSRDAMNIDGLGIKVVEQLFEHKLIENVADIYRLTKEQLLPLERMGD
KKATNLLNAIEASKENSLEKLLFGLGIRHVGSKTAKVLATQFENMDSLMDAKFDDFKVVA
EVGDVIANSIVHYFSQTANVELIDQLKELGLNMSYKGARLADANTEHVFFGKTVVLTGTL
ETLSRKEAGIKLESLGAKVSGSISSNTDYLIAGAKSGSKLTKAQQLGVTVLDEATFLSMM
NE
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacttcgaattgaagagttaacaaaacttttaacacagtataaccatgaatat
tatgtattagataaaccgagtgttagcgatcgtgaatacgatcgtttaatgcaggaatta
atggaacttgaagaaaagcatcctgaacttaagtctaatacctctccaacggttcgtgtt
ggaggaaaggttctagaaggatttaataaaattgaacatgaaaaaccgatgttatctctt
tcaaatgcttttaatgaggatgacttacgtgattttgatacacgagttaaaaaagtatcg
ccaaaagcaacatatgtttgtgaattgaaaatcgatggattagccgtgacgctacattat
aataatggagcctttgttaaaggggcaacacgtggggatggggtcattggagaggatatt
tcggaaaacttaaaaacaatcaaaacaattcctcttcatatcaataataatcaaccgctt
gaagtacgtggtgaagtttatatgtcaaaagcgacgcttgagaagttaaatgaagaacgt
gctgctaaaggagaagagttatttgcaaatcctcgtaatgcagccgcaggttcgcttcgt
caattagattcacgtattgcggcaaaacgaaacttagcaatgttttgttacgcggttccg
agtgcggctgatttaggttgtacaacacatgaggagagcttacaaaaaatttctgaactt
ggttttaatgtaaatccaaatcgtcaagtctgcgaaaatattgatgaagtcttagagtac
attaaccgttggacaaatgcgcgttttgatttaccatatgaaattgatggaattgtaatt
aaagtgaatcaattacaggaacaagataagttaggaaacacagtgaagagtccacgttgg
gcgattgcctataagttcccagctgaagaagttgaaaccattttaacggatattatattt
acggttggtcgtacaggaatggtaacgcctaatgctgtgttagaaccggttcgtgtagcg
ggaactcgagtttctcgtgcaacgttacataatgaagattatgtgacatcacgagatata
cgtattaatgaccgtgtcattattcgaaaagcaggagaaattattcctgaggttgtaaag
ccagtcattgatgcgcgtaatggcgatgaaataccatttgaaatgatttcaacttgtcca
cgttgttctagtgaattagttcgtgaagcaggtgaagcggattattattgtttaaatatt
gattgtcctgcgcgaattgttgaaagtttaagtcattttgtttctcgtgatgcgatgaat
attgatggacttggaatcaaagtagtcgagcagttatttgaacataaattaattgaaaat
gttgcagacatttatcgcctaacaaaagagcaattattgcctcttgaacgtatgggagat
aaaaaagcaacgaatctattaaatgcaattgaagcaagtaaagaaaatagtttagagaaa
ttattatttggacttggaattcgtcatgttggaagtaagacagctaaggttctagcaact
cagtttgaaaatatggattcgttaatggacgcaaaatttgatgactttaaagtagtagca
gaggtcggagatgttattgcaaatagtatcgttcattatttctctcaaacggctaatgtt
gaattaattgatcagttaaaagaactaggattaaatatgtcatataaaggggcccgttta
gctgatgctaatacagagcacgtattctttgggaaaacagtcgtattaactggaacactt
gaaacgttatcgagaaaagaagcaggcattaaattagaatcgcttggggcgaaagtttca
ggaagtattagttctaatacagactatttaatcgctggagcaaaaagtggttctaaatta
accaaagcgcagcaattaggcgtgacagtattagatgaagcaacgtttttatcgatgatg
aatgagtag
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