Thermoanaerobacterium saccharolyticum: Tsac_2561
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Entry
Tsac_2561 CDS
T02137
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tsh
Thermoanaerobacterium saccharolyticum
Pathway
tsh03030
DNA replication
tsh03410
Base excision repair
tsh03420
Nucleotide excision repair
tsh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Tsac_2561
03410 Base excision repair
Tsac_2561
03420 Nucleotide excision repair
Tsac_2561
03430 Mismatch repair
Tsac_2561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsh03032
]
Tsac_2561
03400 DNA repair and recombination proteins [BR:
tsh03400
]
Tsac_2561
Enzymes [BR:
tsh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Tsac_2561
DNA replication proteins [BR:
tsh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Tsac_2561
DNA repair and recombination proteins [BR:
tsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Tsac_2561
NER (nucleotide excision repair)
GGR (global genome repair) factors
Tsac_2561
MMR (mismatch excision repair)
DNA ligase
Tsac_2561
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Tsac_2561
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
RNA_ligase
RNA_pol_A_CTD
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AFK87557
UniProt:
I3VYG2
LinkDB
All DBs
Position
complement(2613722..2615701)
Genome browser
AA seq
659 aa
AA seq
DB search
MTVEDRIKELRDKLNHHNYMYYVLDKPEISDYEYDMMMRELIELEEKYPQFKTPDSPTQR
VGGEPLKEFEPFTHVVPMQSLANAFSEGELRDFDRRVKASVGDVEYVVELKIDGLSVELI
YENGFFTVGSTRGDGIIGENVTNNLKTIRSIPLRLKDDLNLIVRGEVFMPKASFEKLNEE
RELNGESFFANPRNAAAGSLRQLNPKITAKRDLDIFVFNLQRIDGIKLQTHAEALEFLKY
QGFKVSPHIKVCKNIDEVIEDINYIRDIRDSLPYETDGAVVKVNDLSKREILGSTAKDPR
WAIAFKYPAERQKTKVKDIVVQVGRTGALTPTAILEPVKIAGSIVSRATLHNEDYIKEKD
IRIGDTVIIQKAGEIIPEVVSVVVEERDGSEKFFIMPEVCPECGAATVRLPGESVTKCTG
LNCPAKLKRGIIHFASKDAMDIDGLGPAVIGQLLDNHLIHNISDLYYLKYDDLLKLDRMG
DKSAKNLINAIEESKGRDLDRLIFGLGIDLIGSKAAGILASHFKTMESLEKATFEELTEI
EEIGPKMADSVVAFFKEKQNLNIIDRLKAAGVNMRKKDAINVNDDFEGLTFVLTGTLEKY
TRDEAKKLIEERGGKVTGSVSKKTDYVVVGIDPGSKLSKAQELGIKILNEEEFENMLKQ
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgacggtagaagacaggataaaggaattgagagataaacttaatcatcacaactacatg
tactacgtattggacaagcctgaaatatccgactatgagtacgacatgatgatgagggag
ctcattgagttagaagaaaagtatcctcagtttaagacgcctgactcgccgactcaaagg
gttggcggtgaacctttgaaagaatttgagccatttactcacgtagtgccgatgcagagc
ttggctaatgctttttctgaaggggagcttagggattttgataggagagtaaaagcgtct
gtcggtgatgtagaatacgtagtagagcttaaaattgacggtttgtctgtggagctcata
tatgaaaatggcttttttaccgttggctctacgagaggtgacggaattataggcgaaaat
gtgacaaacaatctaaaaactattagatcaatacctttgagacttaaagatgatttaaac
ctcatcgtaagaggcgaggttttcatgcctaaggcttcatttgaaaagttaaacgaagaa
agagaattaaatggagaaagcttttttgcaaatccgagaaatgctgctgccggatcgctt
aggcaattaaatccaaaaataacggctaaaagagatctggacattttcgtatttaatttg
cagagaatagatgggataaaattgcaaacacatgctgaagcattagaatttttgaaatat
caaggatttaaagtaagccctcatattaaagtatgcaaaaatatagacgaagtcattgaa
gacataaactacataagggacataagggatagtttgccttatgaaacggacggagcggtt
gtcaaggtaaatgatttgagcaaaagggaaattttggggtctaccgcaaaagatccccgc
tgggcaattgcattcaaatatccagcagaaaggcaaaagacgaaagtcaaagatatagta
gttcaggttggaaggaccggtgcgctgacaccaactgccatattagaacctgtgaagatt
gcaggttcgatcgtgtcaagagcgacgcttcacaatgaagattacataaaagaaaaggac
ataagaatcggtgacacggtaataatccaaaaagcaggtgaaatcatacctgaagttgta
agtgttgtagtagaagaaagagatggcagcgaaaagttttttatcatgccggaagtgtgc
cctgaatgcggtgctgcaacggtaaggcttccaggcgaatctgttactaagtgcacagga
ttaaactgtcctgcaaagctaaaaagaggcataatacactttgcatctaaagatgccatg
gacatagatgggttaggaccggctgtaataggacagcttcttgacaaccatcttatacac
aatatatcagatctgtattatttgaagtacgacgatttgctaaaacttgacaggatgggg
gataaatcagcaaaaaacctcatcaatgctatagaagaaagcaagggcagagatttagac
agattgattttcgggcttggcattgaccttattggaagcaaagctgccggcattttagcc
agccatttcaagacgatggaatctcttgagaaagctacttttgaggagcttactgaaata
gaggaaattggtcctaagatggcagacagtgttgtggccttttttaaggaaaagcaaaat
ctcaatataatagacagattgaaagctgctggcgtaaatatgcgcaagaaagatgcaata
aatgtgaatgacgattttgaaggacttacttttgtcttaactggaacacttgaaaaatac
acaagagatgaggctaaaaagcttatagaagaaagaggaggaaaagtgacaggttctgtc
agcaaaaagacagattatgtggttgtaggcatagatccaggctcaaagctttcaaaagcg
caagagcttggaataaaaattttaaatgaagaagagtttgaaaacatgctgaaacaatga
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