Tenacibaculum singaporense: D6T69_12025
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Entry
D6T69_12025 CDS
T09846
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tsig
Tenacibaculum singaporense
Pathway
tsig03030
DNA replication
tsig03410
Base excision repair
tsig03420
Nucleotide excision repair
tsig03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D6T69_12025 (ligA)
03410 Base excision repair
D6T69_12025 (ligA)
03420 Nucleotide excision repair
D6T69_12025 (ligA)
03430 Mismatch repair
D6T69_12025 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsig03032
]
D6T69_12025 (ligA)
03400 DNA repair and recombination proteins [BR:
tsig03400
]
D6T69_12025 (ligA)
Enzymes [BR:
tsig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D6T69_12025 (ligA)
DNA replication proteins [BR:
tsig03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D6T69_12025 (ligA)
DNA repair and recombination proteins [BR:
tsig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D6T69_12025 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D6T69_12025 (ligA)
MMR (mismatch excision repair)
DNA ligase
D6T69_12025 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D6T69_12025 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
Auto_anti-p27
HHH
OAS1_C
AphA_like
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AZJ36217
UniProt:
A0A3S8R8Y0
LinkDB
All DBs
Position
complement(2710979..2712976)
Genome browser
AA seq
665 aa
AA seq
DB search
MTVQEKIQQLREELHKHNHSYYVLDAPTISDYEFDIKLKELQQLEDENPEYFDPNSPTQR
VGGEVTKNFETVTHKHRMYSLDNSYSKEDLLDWEKRVQKILGTDEVEYTCELKYDGASIN
LTYENGEFVQAVTRGDGFQGDNVTTNIRTIKSIPLLPNSDFVRDFEMRGEIILPLDGFNK
MNEERIANDEEPYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQVVTNERKYSSHFESLEA
ARKVGFKVPGTIVLAKSIEEVLDFVNEWDVKRHTLPYETDGVVVKVNSFQQQDELGYTSK
APRWAIAYKFKAEQVSTVLNEITYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIA
KLDVRVGDTVFVEKGGEIIPKIIAVDLTKRPVDSVPTQYATHCPECNTELVRTDGDAKHY
CPNEFGCAPQITGRIKHFISRKAMDIDGLGGETVDLLRKEGLIKNYADLYDLTVEQVIPL
ERMAEKSAQNMIEGIEKSKEIPFEKVLFALGIRFVGETVAKKLAKHFKSIDNLMNADFET
LVAVDEIGDRIAQSIIDFSNDLGNIELVNRLKSHGVQLEVSAESLEGQTDKLSGKVFVVS
GVFHQMSRTELKKAIEDNGGKVSSSISKKTSYIVAGDNMGPSKLTKAESLGIPIISEQDF
IDMIA
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgacagttcaggagaagatacaacaattaagagaagagttacacaaacataatcatagt
tattatgtgttggatgcaccaaccatatcagactatgaatttgatattaagttaaaagag
cttcagcagttagaagacgaaaatccagaatattttgatccaaattccccaacgcaacga
gtaggaggagaagtaactaaaaactttgaaacggttactcacaaacatagaatgtattcg
ttagacaattcgtattctaaagaagatttgttagattgggaaaaacgtgtccagaaaatt
ttaggaaccgatgaagttgaatatacctgtgaattaaaatacgatggagcttcaataaac
cttacttatgagaatggtgagtttgtacaagcagttactcgtggagatggttttcaagga
gataatgtaacaaccaatattcgtacaataaaatccattccactattgccaaatagtgat
tttgtgagagattttgaaatgcgaggagaaatcattttaccgttagacggatttaataaa
atgaatgaagaacgtatagcgaatgatgaagaaccatatagaaacccgcgtaatacagct
agtggaagtttaaaattacaagacagtgcagaagttgcaaaacgaccactagattgttta
ttgtaccaagttgtgacaaatgaacgaaaatatagttcgcattttgaaagtttagaagca
gccagaaaagttgggtttaaagttccaggtaccattgttttagctaagtcgattgaagaa
gtgttagattttgtaaacgagtgggatgttaaacgtcacacattaccttatgaaacagat
ggagtagtggtaaaagtaaattcgtttcagcaacaagacgaactaggttatacttcaaaa
gcacctcgttgggcaattgcttacaaatttaaagcagagcaagtttcaacagtattaaat
gaaattacctatcaagtaggtagaacaggagcaataacacctgtagcaaacttagaacct
gtacaattagctggaacgattgtaaaaagagcttcattacataacgcagaccaaatagca
aagttagatgtacgagtaggagatactgtttttgtagaaaaaggaggggaaattatcccg
aaaattattgctgttgatttaacgaaaagaccagtagattctgttcctacgcaatatgca
acccattgccccgaatgtaatactgaattagttagaactgatggagatgcaaaacattat
tgtccgaacgaatttggatgtgcgcctcaaattacaggtagaatcaagcattttatcagt
agaaaagccatggatattgatggcttaggtggagaaactgttgatttattacgcaaagaa
ggactgattaaaaactatgcggatttatatgacttaacggtagaacaagttattccgtta
gagcgaatggctgaaaaatcagcacaaaatatgattgaaggaattgaaaaatcaaaagaa
attccgtttgaaaaagtgttgtttgctttaggaatccgttttgttggcgaaactgtagct
aaaaagttagcaaaacactttaagtcaatcgataatttaatgaacgctgattttgaaaca
cttgttgcagttgacgaaattggagatagaattgcacaaagtattattgacttttcgaat
gatttaggaaatattgaattggttaaccgattaaaatcacatggagttcaactagaagtt
tcagcagaaagtttagaagggcaaactgataagttatcaggtaaggtatttgtggtttca
ggagtttttcatcaaatgagtagaacagaacttaaaaaagcaattgaagacaacggtggt
aaggtatcgagttccatttctaaaaaaacgagctatattgtagcaggtgataatatggga
ccgagtaagcttactaaagctgaaagtttaggtattccaattatttctgaacaagatttt
attgatatgatagcttaa
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integrated database retrieval system
