Thermocoleostomius sinensis: OXH18_04810
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Entry
OXH18_04810 CDS
T09238
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tsin
Thermocoleostomius sinensis
Pathway
tsin03030
DNA replication
tsin03410
Base excision repair
tsin03420
Nucleotide excision repair
tsin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OXH18_04810 (ligA)
03410 Base excision repair
OXH18_04810 (ligA)
03420 Nucleotide excision repair
OXH18_04810 (ligA)
03430 Mismatch repair
OXH18_04810 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsin03032
]
OXH18_04810 (ligA)
03400 DNA repair and recombination proteins [BR:
tsin03400
]
OXH18_04810 (ligA)
Enzymes [BR:
tsin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OXH18_04810 (ligA)
DNA replication proteins [BR:
tsin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OXH18_04810 (ligA)
DNA repair and recombination proteins [BR:
tsin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OXH18_04810 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OXH18_04810 (ligA)
MMR (mismatch excision repair)
DNA ligase
OXH18_04810 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OXH18_04810 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
Auto_anti-p27
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
WAL61321
UniProt:
A0A9E9C5M7
LinkDB
All DBs
Position
1091154..1093325
Genome browser
AA seq
723 aa
AA seq
DB search
MSSTPELAARSRLAELRKLLQKASYEYYVLDAPTMPDSVYDQLYRELQNLEQQYPELITP
DSPTQRVGEKAATRFTSVQHNIPLYSLENAFNLDEFASWQERWRRVAPEVESFEYVCELK
IDGNALALTYEQGILVRGATRGDGMTGEEITQNVKTIRSIPLRLNLENPPSIVEVRGEAF
LELDVFKQINQEREQSGESLFANPRNATAGTLRQLDSRVVAKRRLAFFAYTLHVVDEAMG
VENRESEGGETLQDTEAQLSLLTTFASPQHTVLKPEHATRQTPQTQWDCLELLQNMGFKV
NPHRQLCRSLEEVAAYYDRWSTERLQLPYLTDGVVVKLNSLTLQERLGFTQKFPRWAIAL
KYPAEEAPTVVETIDVNVGRTGAVTPMAFLRPVQLAGTTVSRATLHNADRVAELDIRIGD
TVVVRKAGEIIPEVVRVLPELRPEATQPYQMPTHCPECGQPLIRETGEAVIRCVNSSCPA
ILRKAIEHWASRDAMDIRGLGEKWVQQLVDRNLIHTVADLYDLTVELLMQIDRMGQKSAQ
NLVDAIDQSKHKPWARVLYGLGIRHIGSVNAQVLADHFPTVEALAAAEIETVASVYGIGT
EIAQSVHQWFRVPANQALIERLRSAGVQLAGESHRSSALEPQPLKGKVFVITGTLPNLTR
DEAKALIQKAGGKVTSSVSAKTSYVVVGAEAGSKLAKAEELGITQLTEADLQKLIASLEE
RSP
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccactccagaattagctgcgcgatcgcgccttgccgaactacggaagctgctg
caaaaagccagctatgaatactatgtgctggatgctcccacaatgcccgattctgtctat
gatcagctttatcgagaactgcaaaacctggaacagcagtatccagagttgattaccccc
gatagccccacgcagcgagtcggcgaaaaggcagcgacgcggtttacctccgttcaacac
aatattcccctttacagtctggagaatgcgtttaatctcgatgagtttgcgagttggcaa
gagcgctggcgacgggtagccccagaggtggagtcatttgagtacgtctgtgaactcaaa
atagacggcaatgctttggcgctcacatatgagcaggggattttagtgagaggggcgacg
cgaggagacggcatgaccggagaagaaattacccaaaatgtcaaaactattcgatcgatt
cccctgcggctcaatttagagaatccaccgtcgatcgtggaagtacggggcgaggcgttt
ctggagttggatgtgtttaaacaaattaaccaagaacgcgagcaatccggagaatcgttg
tttgccaatccgcgtaacgctacagcgggaaccctgcgacaactggattcacgggtggtg
gctaaacggcggctagctttttttgcctataccctgcatgtagtggatgaggcgatgggg
gttgaaaaccgggaatcggaaggtggggagactttacaggatactgaagcgcagctttcc
ctgttaaccaccttcgcgtcgcctcagcacacggttctaaaaccagaacatgccacacgc
caaacgccgcaaacgcagtgggattgtctggaacttttgcaaaacatgggctttaaggtc
aatccccatcgtcaactctgtcgatcgctggaggaggtggctgcatactacgatcgttgg
tctacggagcggttgcagttgccctatctgaccgacggggtggtagtcaagctcaactcc
ctgacgctgcaagagcggcttggctttacgcaaaagtttccacgctgggccattgccctc
aagtatccagccgaagaagcgccaacagtagttgaaacgatcgatgtcaacgtgggtaga
actggggcagtgacaccgatggcgtttttgcgaccagtgcagttggcgggaactacggta
tcacgcgcaaccctgcataacgccgatcgcgtagcagaactagacattcgcattggcgat
acggtggtggtgcgtaaagctggagaaattattcccgaagtggtgcgggtgctgcctgaa
ttgcgtccagaagctacgcaaccctaccaaatgccgacccattgcccagaatgcggtcaa
ccgctgatacgcgaaaccggagaagccgtgattcgctgcgtcaattcctcctgtccggca
attttgcgcaaggcgatcgaacattgggctagccgagacgccatggacattcgcggccta
ggagaaaagtgggtgcaacagttggtcgatcgcaacctcatacacaccgtcgccgatctg
tatgacctcaccgtagagctactgatgcagatcgatcgtatggggcaaaagtctgcgcag
aatctcgtagacgcgatcgatcaatccaagcataagccttgggcgcgagtgctgtatggc
ttgggcattcgccacattggcagcgtcaatgcgcaggtcttagctgatcactttccgacg
gttgaggcactggcagccgcagagattgaaacggtcgcctcggtgtatggcattggcaca
gaaattgcccaatcggtgcaccagtggtttcgggttccggccaatcaagcgttaattgag
cggttgcgatcggcaggggtgcagctagcgggtgaatctcaccgatcgagtgcgttagaa
ccacagcccctcaaaggcaaagtgtttgtgattactggaacgctgcctaacttgacccgc
gacgaggctaaagccctaattcaaaaagcaggtggcaaagttactagttctgttagcgcc
aaaactagttatgtagtcgtgggagcagaggccggatcaaaattggccaaggcagaagag
ttaggaatcacccagttgaccgaagccgatttgcaaaaactcatcgcatcgttagaagag
agatcaccctag
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integrated database retrieval system
