Tsukamurella tyrosinosolvens: ASU32_16380
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Entry
ASU32_16380 CDS
T05267
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tsm
Tsukamurella tyrosinosolvens
Pathway
tsm03030
DNA replication
tsm03410
Base excision repair
tsm03420
Nucleotide excision repair
tsm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ASU32_16380
03410 Base excision repair
ASU32_16380
03420 Nucleotide excision repair
ASU32_16380
03430 Mismatch repair
ASU32_16380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsm03032
]
ASU32_16380
03400 DNA repair and recombination proteins [BR:
tsm03400
]
ASU32_16380
Enzymes [BR:
tsm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ASU32_16380
DNA replication proteins [BR:
tsm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ASU32_16380
DNA repair and recombination proteins [BR:
tsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ASU32_16380
NER (nucleotide excision repair)
GGR (global genome repair) factors
ASU32_16380
MMR (mismatch excision repair)
DNA ligase
ASU32_16380
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ASU32_16380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AUN41388
LinkDB
All DBs
Position
complement(3367725..3369827)
Genome browser
AA seq
700 aa
AA seq
DB search
MAKELTEDDRRAWQELAEEVRGHQFRYYVQDAPVLSDGEFDALLRRLQEMETAFPELAVA
DSPTKLVGGGFSTEFTAVDHLERMMSLDNVFDEGELRDWIARVQKDVGGEVVFLTELKID
GVALNLVYENGSLVRGATRGDGRTGEDVTLNARTLRDVPHVLTPSDEFPIPEVLEVRGEV
FFRLADFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPQITSRRRLGMICHGLGRIQGEW
SPSSLHDAYRALAAWGLPVSAHTKQVSGADAVVDRVFYWGEHRHDPEHEIDGLVVKVDEI
SLQRRLGATSRAPRWAIAYKYPPEEVTTKLLDIRVNVGRTGRVTPYAYMAPVTVAGSTVE
FATLHNASEVERKGVLIGDTVTIRKAGDVIPEVLGPVVDLRDGTERPFVMPVTCPECGAT
LAPSKEGDADIRCPNTETCPAQLRERLFYLAGRNCFDIEGLGYEAASALTASPVLHNEGD
VFSLTEEDLLQVPLFTNDGGTLSANAQRLLTNLDVAKNKPLWRVLVGLSIRHVGPSAARA
LAQELGSLDAIAEAGVDRLAEVDGVGRTIAEAVIDWFTVEWHREIVEKWRAAGVRLEDER
DESVQRTLEGMSIVVTGSLQNYSRDEAKEAILVRGGKAASSVSKKTAFVVIGDAPGSKAD
KAEQLGVPILDEDGFTTLLTEGPDAVRPPEADEADEPAPE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaggagctgaccgaggacgaccgccgcgcgtggcaggaactcgcggaggaggtg
cgcgggcaccagttccggtactacgtgcaggacgcgcccgtgctctccgacggggagttc
gacgcgctgctgcgtcgcctgcaggagatggagaccgcgttcccggagctcgcggtggcc
gattcgcccaccaagctggtgggcggcggattctccacggagttcaccgcggtcgatcac
ctcgagcggatgatgtcgctggacaacgtcttcgacgagggggagctgcgcgactggatc
gcccgcgtgcagaaggacgtcgggggcgaggtcgtcttcctcacggagctcaagatcgac
ggtgtcgccctcaacctggtgtacgagaacggctccctggtgcggggcgccacgcgcggc
gacggtcgcaccggcgaggacgtgacgctcaacgcccgcaccctccgggacgtgccgcac
gtgctcaccccgtcggacgagttcccgatccccgaggtgctggaggtccgcggcgaggtc
ttcttccggctcgcggacttcgaggagctcaacgccggcctcgtcgcggagggcaagccg
cccttcgccaatccgcgcaactccgcggccggatcgctgcgccagaagaacccgcagatc
acctcacggcgccggctcgggatgatctgccacggcctggggcggatccaaggggagtgg
tcgccgtcctcgctgcacgacgcctaccgtgccctcgcggcctggggcctgccggtctcg
gcccacaccaagcaggtgtccggggccgacgccgtggtcgaccgcgtcttctactggggc
gagcaccggcacgacccggagcacgagatcgacggcctggtggtgaaggtcgacgagatc
tccctccagcgccgcctcggggccacctcccgcgcgccgcgctgggccatcgcctacaag
tacccgccggaggaggtgaccacgaagctgctcgacatccgggtcaacgtgggccgcacc
ggccgcgtcacgccgtacgcctacatggcaccggtcaccgtcgcgggctcgacggtcgag
ttcgcgacgctgcacaacgcctccgaggtggagcgcaagggcgtgctcatcggcgacacc
gtcaccatccgcaaagccggcgacgtgatccccgaggtgctcggccccgtggtcgacctg
cgcgacggcaccgagcggcccttcgtcatgcccgtcacctgcccggagtgcggcgcgacc
ctcgcgccgtcgaaggagggtgacgccgacatccgctgccccaacaccgagacctgcccc
gcccagctccgcgagcgtctgttctacctggccggccggaactgcttcgacatcgagggg
ctgggctacgaggccgcctccgcgctcaccgcctcgccggtgctgcacaacgagggcgac
gtcttctcgctcacggaggaggacctgctgcaggtcccgctgttcaccaacgacggcggc
accctctcggcgaacgcgcagcgcctcctcaccaatctcgatgtggccaagaacaagccg
ctgtggcgcgtgctcgtgggactgtccatccggcacgtcgggccgtcggcggcgcgggcg
ctcgcgcaggaactcggcagtctcgacgcgatcgccgaggccggcgtcgaccggctcgcg
gaggtcgacggggtcggccgcacgatcgccgaggcggtgatcgactggttcacggtcgag
tggcaccgcgagatcgtcgagaagtggcgcgccgcgggcgtgcgcctcgaggacgagcgg
gacgagtccgtgcagcgcacgctcgagggcatgtccatcgtggtcactggatccctgcag
aactactcgcgggacgaggccaaggaggcgatcctcgtgcgcggagggaaggcggcgagc
agcgtctccaagaagacggccttcgtcgtgatcggcgacgcgcccggttccaaggccgac
aaggcggagcagctgggcgtgccgatcctcgacgaggacggctttaccacgctcctcacg
gaggggccggacgcggtgcggccgccggaggccgacgaagcggacgagccggcaccggaa
tga
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