Terrihabitans soli: IZ6_21380
Help
Entry
IZ6_21380 CDS
T07468
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tso
Terrihabitans soli
Pathway
tso03030
DNA replication
tso03410
Base excision repair
tso03420
Nucleotide excision repair
tso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IZ6_21380 (ligA)
03410 Base excision repair
IZ6_21380 (ligA)
03420 Nucleotide excision repair
IZ6_21380 (ligA)
03430 Mismatch repair
IZ6_21380 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tso03032
]
IZ6_21380 (ligA)
03400 DNA repair and recombination proteins [BR:
tso03400
]
IZ6_21380 (ligA)
Enzymes [BR:
tso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IZ6_21380 (ligA)
DNA replication proteins [BR:
tso03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IZ6_21380 (ligA)
DNA repair and recombination proteins [BR:
tso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IZ6_21380 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IZ6_21380 (ligA)
MMR (mismatch excision repair)
DNA ligase
IZ6_21380 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IZ6_21380 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
BCJ91403
UniProt:
A0A6S6QJE8
LinkDB
All DBs
Position
complement(2077101..2079269)
Genome browser
AA seq
722 aa
AA seq
DB search
MSPPKKGAKSEEADIPSTPLEAQAEHARLVEEIRAHDERYYQEDAPTVSDADYDALRKRL
VAVEAAFPDLVTAESPTQKVSGAASEKFDKAKHGQPMLSLDNAFDGEDVTDFVGRVRRFL
NLKDDEIAFTAEPKIDGLSANLRYEKGKLVLAATRGDGEVGEDVTVNIRTIKEIPQTLKG
KDVPDLIEIRGEVYMTHDEFRALNERQEKAGKPVYANPRNSAGGSLRQLDPKITAERNLH
FFAYAWGEHSGLPAETQHGVVKAFANWGFKTNPRMKVVKSVEEMLAFHRETGEVRASLGY
DIDGVVYKVDRIDLQRRLGYVSRSPRWAIAHKFAAEQAFTTLNDIDIQVGRTGKLTPVAK
LEPVTVGGVVVTNATLHNEDFIKGVDSHGNPVRDGNDVRIGDTVVVQRAGDVIPQIVRIV
PEKRPKSAKPFQFPHVCPACGSHAVREEGESDRRCTGGLICPAQAVERLRHFVARNAMDI
EGLGEKQIQAFFEWGLVKEPSDIFALERNEKKPGNLTFLKNREGFGELSVKNLYAAIEEA
RTRQVHRVLFGLGIRHVGDINAKRLMRHYKTIDALRAAAKEARPPEEGNRADKGNEAWQE
MNDVSGIGAIVAQAVVDFFQEPKNDPPIEALLKELTPEPMEEAAQDTAVAGKTVVFTGTL
EKMTRDEAKAQAERLGAKVSGSVSKKTDIVVAGPGAGSKLKQATELGVKVMTEDEWLALT
GS
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcccccgaaaaagggcgcgaaatccgaagaagccgacattccttcgacaccgctc
gaagcgcaagccgaacatgcgcgtcttgtcgaagagataagggcgcatgacgagcgctat
tatcaggaagacgcgccgacggtttccgacgccgattacgatgcgctgcgcaaacgcctc
gtcgctgtagaggcggcatttcccgacctcgtcaccgccgaaagcccgacacagaaagtc
tcgggcgcagcctccgaaaaattcgacaaggcgaagcacggccagcccatgctatcgctc
gacaacgcctttgacggcgaagatgtgacggatttcgttggccgcgtgcggcgctttctc
aatctgaaagacgacgagatcgccttcaccgccgagcccaagatcgatgggctttcggcc
aatctccgctatgagaagggcaagctcgttctggcggcgacgcgcggcgatggcgaagtc
ggcgaagacgtcaccgtcaatatccgcacgatcaaggaaatcccacagacgctgaagggc
aaggacgtgcccgatctcatcgagatccgcggcgaagtctatatgacccatgacgagttc
cgcgcgctgaacgagcggcaggaaaaggcgggcaagcccgtctacgccaatccgcgcaat
tcggccggcggctcgctgcgccagctcgatccgaaaatcaccgccgagcgcaatctgcat
ttcttcgcctatgcctggggcgagcattccggtcttccggccgagacgcagcacggcgtc
gtcaaggcattcgcgaattggggcttcaaaaccaatccgcggatgaaagtggtcaagagt
gtcgaggagatgctcgccttccatcgcgagaccggcgaagtgcgcgcgagcctcggctac
gatatcgacggtgtggtctataaggttgaccgcatcgatctgcagcggcggctcggctac
gtctcgcgctcaccgcgctgggccatcgctcataaatttgccgccgaacaggcgttcacc
acgctcaacgatatcgacatccaggtcggccgcaccggcaagctgacgccggtcgcaaag
ctcgaaccggtcacggtcggcggcgtcgtcgtgacgaatgcgacgctgcacaacgaagac
ttcatcaaaggcgtcgattcacacggcaatcccgtgcgcgacggcaatgatgtgcgcatc
ggcgacaccgtcgtcgtgcagcgcgcgggggacgtcattccgcagatcgtgcgcatcgtt
ccggaaaagaggccgaaaagcgcaaagcccttccagtttccgcatgtatgcccggcctgc
ggcagccatgcggtgcgcgaagagggcgagtcggatcggcgctgcaccggcggcctcatc
tgtccggcgcaggcggtcgagcggcttcgtcatttcgtcgcgcgcaacgccatggacatt
gaaggtctcggcgaaaagcagatccaggcattcttcgaatggggcctcgtcaaagagccg
tcggatatttttgcgctcgagcgcaacgagaagaagccgggaaatctgaccttcctgaaa
aaccgcgaaggctttggcgagctgtcggtcaaaaacctttacgccgccatcgaagaggcg
cggacgcggcaggtgcatcgcgttctgttcgggctgggcatccgccatgtcggcgacatc
aacgccaagcgcctgatgcgccattacaagacgatcgatgcgctgcgcgccgcagctaaa
gaggcgcgcccgccggaagagggcaaccgcgccgacaagggcaatgaggcgtggcaggaa
atgaacgatgtgtcgggcatcggcgccatcgtcgcccaggccgtcgtcgatttctttcag
gaaccgaaaaacgatccgccgatcgaggcgctgctgaaagagctgacgccggagccgatg
gaagaagcagcgcaggatacggcggtcgccggcaagacggtggttttcaccggcacgctc
gaaaaaatgacgcgcgatgaagccaaggcgcaggccgaacggctcggcgcgaaggtgtcg
ggctcggtgtcgaagaaaaccgatatcgtcgtcgcgggccctggcgccggctcgaagctc
aaacaggcgacggagctcggcgtcaaagtaatgacggaagacgaatggctggcgctgacc
ggctcatga
DBGET
integrated database retrieval system
