Trichinella spiralis: Tsp_02048
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Entry
Tsp_02048 CDS
T01609
Name
(RefSeq) putative 3'-5' exonuclease
KO
K20777
exonuclease 3'-5' domain-containing protein 2 [EC:
3.1.11.1
]
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsp03400
]
Tsp_02048
Enzymes [BR:
tsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
Tsp_02048
DNA repair and recombination proteins [BR:
tsp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
Tsp_02048
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PLA2_inh
Motif
Other DBs
NCBI-GeneID:
10907368
NCBI-ProteinID:
XP_003377866
UniProt:
E5SE79
LinkDB
All DBs
Position
Unknown
AA seq
535 aa
AA seq
DB search
MAEESDNLRDESCDVYCKWNRNPGNVRNIYIVKSWDEWENVLNDLQLDIDKVPVLGLDCE
WSADCSSNATGRNVSLVQFATAFGVCILVRLSQMNTPTSSFVTVLENSKVMKVGLGIEQD
VKRLYLDHGIVVRGKFDVRYLLDVDQRNISLQTLVKNCFDHVLVKLTKVACSNWDATELT
EAQIQYASSDAQYSLDCFLKSLSNKLLDHSWTMWCSCAQTAAQKALDDYDHRPVRQKNFS
KTCSKQLKPKIASTSPSRFALKGPHYQNCILIGPDGDLLSRLPKKKLMWYVKNNLGDVVS
QLSDEHWKLFSCAEEDPPFVVQLRFQPKVVASKESYYIKEKENQCVVCGRLDLLMRKRII
PHLYRRLFPEELKSFRSHDILLLCFDCHRKAEYYDTLFQRSLAEQCDAPLRLAEQQEDKF
SKDAFKIRGYARTLKFHFDQLPDDRREYLQKQLALFFQQDKFQLDLIEKAIEMEKPNATH
RNNIYDTHAECVVNYYANSEIGLSGFEKLWRKRFVDLMKPKFLPSLWSVDASFIY
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagaaagtgataatttgcgagacgaaagctgcgatgtatattgtaaatggaat
agaaatccgggaaatgttagaaatatttacattgtaaaaagttgggatgaatgggaaaat
gtgttgaatgatttgcaattggacatcgataaggttcctgtacttggattggattgcgag
tggtcggcagattgctcttcgaatgccaccggtagaaatgtgagcttagttcagtttgcc
accgcgtttggtgtttgcattctggttcgtctgtctcaaatgaatacaccgacgtcgagt
tttgtcacggttctcgaaaattcaaaagtgatgaaagttggtttaggcattgaacaggat
gtgaaacgtctttatctcgatcatggaattgttgtccgaggtaaatttgatgtacggtat
ttgttggatgtggatcagcgcaatatatctttgcaaacattggtgaaaaattgtttcgat
catgtgctagtgaaactgactaaagttgcttgtagcaattgggatgcaacagaattgacc
gaagcgcagattcagtatgctagttcagatgctcagtattcattggattgctttttgaaa
tctctttccaacaaacttttggatcacagttggacaatgtggtgctcatgcgcgcagact
gctgcacagaaagccttggatgattacgatcaccgtcctgtcaggcagaagaatttcagc
aagacatgctccaaacagttgaaaccaaaaattgcaagcacatctccttcgagattcgct
ctgaaaggtccccattatcagaactgcattctgattggaccagacggggatttgttgtcc
cgattgccgaagaagaagctgatgtggtatgtgaaaaacaatttgggcgatgttgtatct
cagttgtcggatgaacattggaaattattttcatgtgctgaagaagatccaccgtttgtg
gtgcaactgcgatttcagccgaaagtggtcgcttccaaggaaagctattacatcaaagaa
aaggaaaatcaatgcgttgtttgtggtcggttggatttgctgatgcgcaagcggatcatt
ccccatttgtaccgacgactttttcctgaagaattgaaatccttccgcagtcatgacatt
ttgcttctatgcttcgactgccatcgaaaagctgaatattatgatacgcttttccaacgg
tcacttgccgaacaatgcgacgctccactgcgcctggcggagcaacaagaggacaaattt
tccaaagatgcattcaaaattcgcggctacgcccgtactttgaaatttcacttcgaccaa
ttgccagacgaccgaagagaatacttgcaaaagcagttggcgttattttttcaacaagac
aaattccagttggatttgattgaaaaagctatcgaaatggaaaaaccaaacgccacgcat
aggaataatatttacgacacgcacgcggagtgtgttgtgaattattatgcaaattcagaa
attggcctcagcggttttgaaaaattgtggcgtaaacggtttgtcgatctgatgaaaccg
aaatttcttccctctctttggtctgtcgacgcgtcattcatttactga
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