Trichinella spiralis: Tsp_04102
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Entry
Tsp_04102 CDS
T01609
Name
(RefSeq) proteasome subunit alpha type-1
KO
K13141
integrator complex subunit 4
Organism
tsp
Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsp03041
]
Tsp_04102
Spliceosome [BR:
tsp03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
Integrator complex
Tsp_04102
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Proteasome
Proteasome_A_N
HEAT_2
HEAT
F-box-like
PDS5
F-box
Phasin_2
Cnd1
Clat_adaptor_s
LRR_At5g56370
Motif
Other DBs
NCBI-GeneID:
10904523
NCBI-ProteinID:
XP_003374916
LinkDB
All DBs
Position
Unknown
AA seq
1911 aa
AA seq
DB search
MACGATLKRPLDFEHFMSPECAAKRVKRSPSPQMIIRDSPRSPTSQLEDILRDEMKNVVD
NKVDAEKFPTSKSYLVDGGIINNQQHFSLRQIIFVFKKLLAEHRRLNNNREMSSTTSEQT
TASLKTEKKSIHLLKRSEYIRFLFGYAKLEEPYDTPTVSSLRTRKRATDFDDIFRYFDTS
AVSSHLGPESGLTFHTAFKDLLYGIRNGEIDIAEQALKRIDDNFVEEDADELLICCIETL
NRVTDPSMCGFIQQLVENCTFSTRAVDQAVQSLMMYIQLKQYGECEAIFVQIFCILVSFN
AGRSTTSDETVTLLLELLGSSGLSPVRAACLQTLVTIVINRDKPSSLDDLMKTEEDDLQD
HLVKLLWKHTDDVSANVREACVDGLITLYQCGVRLDLERYDDAIKLSQDEEDKVQRHALH
LLHIFGSMYSDEMVSIEDDQVQISMMNDAFSRVCYAMQAGHASVRLEAAKLLGKFNKVGN
NFLEQTLSKKLLDSMRFKFNFFSLSQIMRKEKVELLTGSNQIVTSSTDRYNANYIPLMMS
EACGAFVAAVRAASVKSMADLALKNTEFAQKCVDPLVDMFNDEIEEVRLNAMKSLATLCP
YITISDEQLNFICQGLVDASPDAREAAREVLATCRLETCFGVKKAIVALEKNFNTYAEDG
ESICYCMQKLGQRLAGLVAPLTSEMLGLHPIFLYPESVLSNNFYTAKLIMVLNAASKFPT
VQSLFPHHIWQQYEYLRASKPKLVPLIRPEVKPRLKMFHFEEEIDTFDEFFTSCRNLLEY
SNNNPSLSQSREIFQILRKDLQRLEFIETEQKSKADALKRFVDLVDEFYSLILETESGTV
ILLSEHQFVEKMKKMFLNIFELKLLWKFEDETWRDTILNIEIQVAFLWAANMQFNAGLFP
NSDDVVKPDQLCAADLISGALKIYDAPMYAIFEKMVQYDWHGVPLLTSPTADVLQLVKEQ
LPCLTVPVEEVMQKYAVIIKPVSFSQTVITFQAGFYTDMYVVADLHGFEQDDLKLVRIQI
TYPTKVDIRTPPLRSFHSFRPLLHHLRTKVAVNDRSWTEPAEISLQIVLVTDEFDNLPLG
MRTITASRSVLVRLHPQPQQIRTHTIIGRPLPAKSIFDEFNFRNQYDGDVTIWSPQGRIH
QIEYAVKAVNEGSATVSVKNKTHVVITALKRSPNELSGYQKKIYSLDEHLGISISGLLSD
GRLLAFVLFCRLICIECLNWRWTYGQPIPLSEITHRLELSNLFVYFFVINFVETIDKSVS
ICTEMQVNTQRYGRRPFGVGLLIVGYDNFGPHIYQSCPSANVYDCKAMAMGARSQSARTY
LEKHLSEITNTNLNSLIEHALIALRETLPNELSLSKKNTSLAVVGEGTPFIVYDDDAVEP
FLQNIVNVPSGISGGRVEVGVDYPPLFSPGYHIINYSKDRFGGKSRKPVFMIRRKRKCQI
ERRHKNSRIISIIFFVTSEIFSPIFNFTCRRCIKPFFHVNQLPDGHFDPIENLPSHQRYS
PRNLLDLPDDVLLLICSYLSARSVLRLENTCVRLSGITGMFWRQMRSLKLMDLNLKDDSR
VSKFFSYKYDFLLKKVIERVGPMLKHLDLSNFGSVGCASSKINFQYAILEKCHNLESLCL
NGEVVSMQWLEQLAQLTPSLKHLSMVKAIVRGRGPLDDSILFTVLRSWNRLETLNLRDNR
QIRLGNVHQLPPTLRSLDISGCSVHIDHIMEILNYCKNLKSLALKFTGYFICGMMWCKMD
AIRRLRIDSSDFRVSGRRLELSFALHFDFLSSITVLSISGSLVTDSVLEEIVENLSSTLE
ELSIFDNCPHELESPVMTMIRLPKLKKVGTERNSDLAMEVIENCHKFENLLELDVSYTSN
SWFIWGYLKSNTLKSLIVVGCVPQRKDHMYLRDDLLSRVRRNCPSLTRVVF
NT seq
5736 nt
NT seq
+upstream
nt +downstream
nt
atggcttgcggagctactttaaaacggcccttggatttcgaacatttcatgagtccagaa
tgcgctgcgaagcgtgtgaagagaagtccatctccacaaatgataatacgtgattcacca
cgttcacccacatctcagctggaggatattcttcgtgacgagatgaaaaacgttgtggac
aacaaagtggacgctgaaaaatttccaacttcaaaatcttatctggtggacggtggcatt
atcaacaatcagcagcatttttcattgcggcagattatatttgttttcaagaagttactt
gccgagcatcgacgcctaaataataatcgtgaaatgagctcgacaacaagcgaacaaaca
acggctagtttgaaaacggaaaaaaagtcaatacacttgttgaagcgtagtgaatatatt
cgttttcttttcggctatgcaaaattggaggaaccgtacgatactccgacggtcagttca
ttgagaactcgaaaaagagcaacagattttgatgatattttcagatattttgatacttca
gcagtcagttctcacctgggaccagaatctggcttaacttttcataccgctttcaaagat
ctgctttatggcataaggaatggagaaattgatatcgctgaacaggcattgaaacgaatt
gatgacaattttgtcgaagaagacgcggatgaactgttgatctgctgtatagaaacgttg
aatagagtcaccgacccgtcgatgtgtggatttattcaacagttggtggaaaattgtacc
ttttcaacgcgagcagttgatcaggccgtgcaaagtttaatgatgtacattcaactcaag
cagtacggcgaatgcgaggcaatttttgtacaaatattttgtatattggtctctttcaac
gctggtcgatctaccaccagcgatgaaacagtgacgttgttgttggagctacttggcagt
tctggtttgtcaccagttcgtgctgcctgtttgcagacattagtgactattgtcatcaat
cgggataaacctagttcattggatgatttgatgaaaacagaggaagatgatttgcaagat
catttggtaaagttgttgtggaagcataccgacgacgtcagtgcgaatgttcgagaagcg
tgcgtcgatggtttgataacactttatcaatgtggtgtgcgcttggatttggaacgttat
gacgatgccattaaactgtctcaagatgaagaagataaagtgcaaagacatgcgttacac
cttttgcatattttcggaagcatgtattcagatgaaatggtatcgatagaggatgatcaa
gtacaaatttcaatgatgaatgatgctttttctcgcgtttgctacgccatgcaggctggt
cacgcgtctgttcgacttgaggcggccaagctgttgggtaaatttaacaaagtgggaaac
aatttcttggagcaaactttgagcaaaaaacttctcgacagcatgcgattcaaattcaat
tttttttctctttcccagataatgcgcaaggaaaaagtggaattgttgactggcagtaat
caaattgtcacatccagtacggacaggtacaatgcgaattacatacctttgatgatgagc
gaagcttgtggtgctttcgtggcagcggttcgagcagcaagtgtgaaatccatggcagat
ttggctttgaaaaacacagaatttgcacagaaatgtgtcgaccctttggtagatatgttc
aacgacgaaatcgaggaggttcgtctgaatgcgatgaaaagcttggcaacgttgtgccct
tacataactatcagcgacgagcagctgaattttatctgccagggtctggtggatgcgtca
ccggatgctcgtgaagccgccagggaagttttggcaacttgccgtttggagacgtgtttt
ggcgtcaaaaaagctatcgtcgcgttggaaaagaactttaacacgtacgccgaagacggc
gaatcgatatgctattgtatgcaaaagttgggtcaaagacttgccggtttggtggcgccg
ttgacgtccgagatgttgggcttgcatccgatctttctataccctgaatcggtgttgagc
aacaatttttatacggccaaattgattatggtgttgaatgcggctagtaaatttccaact
gtccagtcgttgtttccccatcacatttggcaacagtatgaatatttgagagcttcgaaa
ccaaaactcgtacctttgattcgaccggaagtgaagcccaggttgaagatgttccacttt
gaagaagaaattgacacgttcgatgaatttttcacatcgtgcagaaatttgttggaatac
agcaacaacaacccctcgctgtcgcagagtagggaaattttccaaattctccgaaaagat
ttgcaacgcttggaatttatcgaaaccgaacagaaaagcaaagctgatgctttgaagcga
tttgtcgatttggtcgacgaattctattcgctgattctcgaaacggaaagtggaacggtc
attttactttctgaacatcagtttgtcgaaaagatgaagaaaatgtttctcaacattttc
gaactgaagcttctgtggaaattcgaagatgaaacttggcgcgatacaattttgaatatt
gaaatccaagtcgcattcctttgggcagctaatatgcaattcaacgccggtttgtttcct
aattccgatgacgtcgttaaacctgaccaactttgtgcagcggacttaatttcgggtgca
ttgaagatatacgacgcgccgatgtacgcgattttcgaaaaaatggtacagtacgattgg
cacggggtgccgttgttgactagccccacagccgatgttttgcaattggtgaaagagcaa
ctgccctgcctgaccgttccagttgaggaagtgatgcaaaaatacgccgtgataataaag
cccgtttcattttcacaaactgtgatcacttttcaagccggcttttacacggatatgtac
gttgtggccgatttgcacggtttcgaacaggacgatttgaaattggttcgaatccaaatc
acgtatccgaccaaagtggacatcagaactcctccgctgcgaagctttcacagctttcga
cccctgttgcaccatttgcgaaccaaagtggcggtgaacgatcgatcctggaccgaaccg
gccgaaatttctttgcaaattgtactagttaccgatgaattcgacaatttgcccctcggc
atgcgcaccattaccgcaagtcgtagcgttctcgttcgactgcatcctcagccacaacag
attcgtactcatacgatcattggacgaccacttcctgcgaaatctattttcgatgaattc
aactttcgaaatcaatacgacggcgatgtcactatatggagtcctcagggtcgtattcat
caaatcgaatatgctgttaaagctgtcaacgaaggatcggcgacggtttcggtgaaaaat
aaaacacatgtcgttattacagcattgaaaagaagtccaaacgaactttctggctatcag
aagaaaatatacagcttagacgagcatcttggaatttcaatttctggtttactttctgat
gggcgacttttagcgtttgttttattctgtagattaatttgcatcgaatgtctgaattgg
cgttggacttatggacagccaattccactgtcagagataacccaccgattggagctgagt
aatttatttgtttatttttttgtcatcaattttgtcgaaactattgataaaagtgtttct
atttgtacagaaatgcaagtgaacacgcaacgctatggccgacgtccattcggagtaggc
ttgctcattgtcggttatgataatttcggaccgcacatttatcaaagctgtccaagcgct
aatgtgtacgattgtaaagcgatggcaatgggagctcgatctcaaagtgcacgtacatac
ttggagaaacatctttccgaaattacaaacacgaatttgaacagtttgatcgagcacgct
ttgattgcacttcgcgaaacacttccaaatgaactcagcttgtctaaaaaaaatacatca
ttggctgttgtcggagaaggaacaccatttattgtttacgatgacgacgctgtggaacca
ttcttgcagaacattgtcaacgttccatcgggcatttcgggcggaagagtagaggtaggg
gtcgactatcctcctctattttcacctggttatcacatcattaactactcgaaagacaga
tttggtggaaaaagtagaaaaccagtttttatgatccgtcggaaacgaaaatgccaaatt
gagcgtcgtcacaagaacagcagaattattagtataattttttttgttacttctgaaatt
ttttcgccaattttcaactttacctgtcgtcgatgtataaaaccattttttcacgtcaac
caattacctgatggtcattttgatccaatcgaaaatttaccatcacatcagagatattct
cctagaaatttgttggatcttcccgacgatgtgctattgttaatttgttcatacctcagt
gcgaggagtgtgcttcgtttggaaaatacttgcgtacgtttgtctggaataactggcatg
ttttggcgacagatgcggtcgttgaaattgatggacttgaatttgaaagacgattcgaga
gtgtcgaagtttttcagttacaagtacgattttctattgaagaaggtcatcgaacgtgtc
ggcccgatgttgaaacatttggatttgtcgaatttcggttccgtgggatgcgcgtcgtcg
aaaattaattttcaatatgcaattttggaaaaatgccacaatttggaaagtttatgcttg
aatggtgaagtggttagcatgcagtggcttgaacagttggcccaattgacgccgtcgttg
aagcatctctccatggtgaaggcgattgttcgcggccgaggaccgctcgacgattcgata
ttgttcactgttttgcgtagttggaatcgtttggaaacgttgaatttgcgcgacaatcgt
caaattcgattgggaaatgttcaccaattgccgccaactttgcgttcgttggacatttcc
ggctgcagcgttcacattgatcatattatggaaattttgaattattgtaaaaatttgaaa
tcactagctttgaaattcaccggctattttatctgtggaatgatgtggtgcaaaatggac
gcgattcggcggcttcgaatcgacagcagcgatttcagggtgtcaggaaggcggttggag
ctatcgttcgctttgcattttgattttttgtcgtccattactgttttgtccatttctggt
agtttggtcactgattctgtgttggaagagattgttgaaaatttatcgtcgactttggaa
gaattgtcgatttttgacaattgtccacacgaattggaatctcctgtgatgacaatgatt
cgattgccaaagttgaaaaaagtcggtaccgaacgaaattccgatttggccatggaagtg
atcgaaaattgtcataaatttgaaaatctcctcgaactcgatgtctcgtatacctcaaat
agctggttcatttgggggtatctgaagtcgaatacgttgaaatcgttgatcgttgtgggt
tgcgtgccccagagaaaagatcacatgtatcttcgtgacgatttgctctctcgagtgagg
agaaattgtccatccttaactagggttgttttttaa
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integrated database retrieval system
