Thermosynechococcus sichuanensis: D3A95_03965
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Entry
D3A95_03965 CDS
T10350
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
tsq Thermosynechococcus sichuanensis
Pathway
tsq03030
DNA replication
tsq03410
Base excision repair
tsq03420
Nucleotide excision repair
tsq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D3A95_03965 (ligA)
03410 Base excision repair
D3A95_03965 (ligA)
03420 Nucleotide excision repair
D3A95_03965 (ligA)
03430 Mismatch repair
D3A95_03965 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tsq03032
]
D3A95_03965 (ligA)
03400 DNA repair and recombination proteins [BR:
tsq03400
]
D3A95_03965 (ligA)
Enzymes [BR:
tsq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D3A95_03965 (ligA)
DNA replication proteins [BR:
tsq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D3A95_03965 (ligA)
DNA repair and recombination proteins [BR:
tsq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D3A95_03965 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D3A95_03965 (ligA)
MMR (mismatch excision repair)
DNA ligase
D3A95_03965 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D3A95_03965 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
PTCB-BRCT
DNA_ligase_ZBD
HHH
BRCT_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AXY67588
UniProt:
A0A3B7MD60
LinkDB
All DBs
Position
complement(797064..799109)
Genome browser
AA seq
681 aa
AA seq
DB search
MTTAAERIQQLRHLLQRASYAYYALDQPIMADEVYDQLYRELQELEAAHPEYITPDSPTQ
RVGEAPVSQFESVSHRIPLYSLENAFTFADMVAWQERWQRYWRSLRREEPIPPAEYVCEL
KMDGVALALTYAKGLLVRGATRGDGQRGEDITSNVRTIRTIPLRLALENPPPLVEVRGEA
FLPLARFHQLNQERQAQGEAPFANPRNAAAGTLRQLDPRIVAQRQLDFFAYALHLPEGGS
VPWGENQAGDPQSQRQVLNALQRLGFRVNPHNADCPDLEAVKAYYDHWQTARHQLPYLTD
GIVVKLNDLTLQQTLGFTQKFPRGCIAWKYEPAQAITDVVAITVQVGRTGALTPVAELVP
VQLAGTTVSRATLHNADYIAELDLHIGDKVVIHKAGEIIPEIVRVFPELRPSTAQPFTMP
TVCPECHQPVVHPANEAVSRCVNPRCPAIVRGQILHWASRDALDIQGLGEKLVQQLVAKA
LVHTPADLYRLTAAQLLSLERMGQKSADKLLQAIANSKQQPWPRVLYGLGIRHVGSVNAQ
VLATQFKSVEELAAATVADLCGVYGIGEEIAQAVHEWFQDPAHQTLIADLKALGLQLAIA
TAPTTGQSLAGKRFVITGTLPTLTREAAKTLIQQHGGQVSESVSRQTDYLVVGEKAGSKL
QRAQALGIPCINETELIEMCR
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgacaacagcagccgaacggattcaacaactgcggcacctgcttcagcgtgcgagctac
gcctactacgctctcgatcagccgatcatggcagatgaagtctatgaccaactctatcgc
gaacttcaggaactagaagcggcgcatcctgagtacatcacccccgacagccctactcag
cgggtcggcgaagcccccgtcagtcaatttgagagtgtcagtcatcgcattcccctctat
agcctcgaaaatgccttcacctttgccgacatggtggcgtggcaggaacgctggcagcgc
tattggcgtagcctacggcgagaggagccaattcccccagcggaatatgtctgcgaactc
aaaatggatggcgttgcccttgctttgacctacgcaaagggtttactggtgcgaggggca
actcggggcgatggccaacgcggtgaggatattaccagcaatgtgcggacgattcgcacc
attccgctgcgcttagctctagagaatccaccgccgctcgttgaagttcgcggggaagcg
tttttacctttggcgcgatttcatcaactgaaccaagaacgccaagcccaaggagaagct
ccctttgccaacccccgcaatgccgccgccggcaccctgcgtcaactggatccgcgcatt
gttgcccaacgccaactggacttctttgcctatgcgctgcatttacctgaagggggtagc
gttccttggggtgagaaccaagcaggagacccccaatcgcagcggcaagtgctcaatgcg
ctgcaacgccttggctttcgggtcaatccccacaatgccgactgccctgacctagaggcc
gtgaaagcctactatgaccactggcaaaccgcacgccaccaactgccctatctcaccgat
ggcattgtggtcaagctcaatgatttaacgctgcaacagacccttgggtttacgcaaaag
tttccccgcggttgtattgcttggaaatatgaaccggcgcaggcgattaccgatgtggtg
gcgattacggttcaggtgggacgcacgggtgcgctcacccccgtcgctgaactcgtgccg
gtgcaattagcgggtacgacggtgtcgcgggcaacgctgcacaatgcagactatattgcc
gaattggatttgcacattggcgataaggtagtgatccacaaagccggcgaaattattcca
gagattgtgcgagtctttccggaattgcgaccatcaacggctcaaccctttaccatgccc
acagtatgtcccgaatgtcatcagccggtggtgcaccctgccaacgaagcggtgagtcgc
tgtgtcaatcctcgctgtccagcgatcgtgcgcggccaaatcctccactgggcgagtcgg
gatgccttagatattcaagggttaggggaaaagctagtacagcaattggtggccaaggcg
ttggtgcatacccctgcggatctctatcgcctaacggcagcacaactgttgagcctcgag
cgcatgggtcaaaagtccgctgataaattgttgcaggccattgcaaactcaaaacaacaa
ccgtggccacgggtgctctatggcctaggtatccgccatgtggggagtgtcaatgcccaa
gtgctggccactcaattcaagtctgttgaggaactggctgctgcgaccgtcgccgatctg
tgtggggtctatggcattggggaggaaattgcccaagcggttcacgagtggtttcaagac
ccagcgcaccaaaccctcattgctgatctcaaagcgctgggactacaactggcgatcgcc
actgcaccaacgactgggcaatcccttgcaggcaaacgttttgtgattacaggcaccctg
cctaccctcacccgtgaagcggccaaaacgctgatccagcagcatggtggtcaagtgagt
gagagtgtcagtcggcaaacagattatctggtggtgggcgaaaaagcggggagtaaactg
caacgtgctcaagcattgggcattccctgcatcaatgaaacagagcttatagaaatgtgt
cgttag
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integrated database retrieval system
