Thamnophis sirtalis (common garter snake): 106539513
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Entry
106539513 CDS
T06107
Name
(RefSeq) telomerase-binding protein EST1A-like
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106539513
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106539513
03032 DNA replication proteins [BR:
tsr03032
]
106539513
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
106539513
mRNA cycle factors
Common to processing body (P body) and stress granule
106539513
DNA replication proteins [BR:
tsr03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
106539513
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
zf-RING_5
zf-RING_UBOX
zf-C3HC4
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
106539513
NCBI-ProteinID:
XP_013909784
UniProt:
A0A6I9X3C2
LinkDB
All DBs
Position
Unknown
AA seq
1097 aa
AA seq
DB search
MGGENEAESRQGPADRANGESRLNLLDTCGVCGQHIQSRRPKLLPCLHSLCQRCLPSPHR
YLMLPPPAAPSPGGGGGGAPKDPPLPPPPPLLQPSSAPSSPVSAPPSPLHCNPEQNNWNK
MHANYEVFMPVQSSNLSEDEIESNGDVEKDRTMIKHESTDDVDVEEERLETVTQEHIIPR
RSERSNKGIPPVWFTAKTMKEPRHRKDNRRPDLEIYKPGLSRLRNKAAPEKPEPPRQEEA
KEERPGPREPPAAACKEDSPPPQPPPEDGGQPPNGFLEGSPQGRGGTPEDWCPRIIRRAK
KPDQQIYQPGKRLQASPREAGAAPPVDEEPPPKEERGADCEKEAGRAGNGLRKPGDQEGE
PSQEAAKPLRGEKGRRAERPRKPRDELGHGKGSPPKRYSRSDKRRSRYRTCSTSSAGSNN
STEGARGEGEVGRKPPERPRPQKQLSASSTDSLEEDRAEEAPEGRRGCEHSRPGRGQDPR
AAQGGGRGSAGRGSGASQPEWRKGGRPSRATPRDPPEAGEGKSQNRGRGILVLPANTDLT
PSGTGSPEAPHAGGARLLFGGSKGPRGWSRGGTSRRLWDPNNPDQKPALKSPGAQLHFLD
TDDEGAPVPRGEPCQAQAPYYRFQNSDNPYYYGGAPYPYTGYPLPYPMGTGTEAYPGAYY
PTGYPKQAEPCGAGGAGSALPAEPPSREAEQQKGPQQQQQELGKALREAGHLEQQLSNLL
SRDRLSPEGLEKMGILRAEMLQLYERCLLTDIEAADAQNVDQLLWKNGFYQVIERFRQLL
KEPSAGESAHEGRARLLQVLDEGTVFFDGLLQKLQLTYQFKLEDYMDGLAVRSKPLRKTV
KYALISAQRSLICQGDICRYREQGSDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVY
TRRKLDAVYYYMRSLAASNPILTAKESLTSLFEETKRKAEQLEQKSPGERGQRSKKVAFR
PSGDDATRLELWIHPSHPRSGQGQESSRDPEQDGGLGSLSPSEEEDVQMEALPDDSEEAE
GSGGELDIRELRAKKQALARKVAEQQRRQDKIQISKETATMLEMQNNYDGVTEALKERKN
GKAPGPEFYKTLQESIQ
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgggtggggagaacgaagctgaaagtcggcaaggccctgcagaccgagccaacggagag
tcgcgcctcaacctcttggacacttgtggggtgtgcgggcaacacattcagagtcggcgg
cctaagctgcttccttgccttcactcgctctgtcagcgttgcctaccgagtcctcaccgc
tacctcatgctgccacctcccgcggccccttcgccgggtggcggaggcggcggcgccccc
aaagatccgcctctgccgccgccgccgccgctgcttcagccgtcctcagcgccttcttcg
ccggtctccgcgccgccttcgccgttgcactgtaatccggaacagaacaactggaacaaa
atgcatgctaattatgaggtgttcatgccagtacagagttctaatctgtcggaggatgag
attgagtcaaatggagatgtagaaaaggatagaactatgataaaacatgaaagcacagat
gacgtagatgtagaagaggagagactggaaacagtgacacaagaacacataattccaaga
agatctgagaggagtaataagggtatacctcctgtatggtttactgcgaagaccatgaag
gaaccgaggcatcggaaggacaacaggcgtccggatctcgagatctacaagccgggcctc
tcccgcctgaggaacaaggcggcccccgagaagccggagcctccgaggcaggaggaggcc
aaggaggagaggccgggccccagggagcccccggcagccgcctgcaaggaggacagcccg
cccccccagccccctcccgaagacgggggccagccgcccaacggcttcctggaaggctcc
ccgcagggccgcgggggcacccctgaggactggtgccctcgcatcatccggcgggccaag
aagcccgaccagcagatctaccagcctggcaaacgcctgcaggcctcgccccgagaagcc
ggggccgcccccccggtagacgaggagccgcccccgaaggaggagaggggagcggactgc
gagaaggaggccgggagggccggcaacggcctcaggaagcccggggaccaggaaggggag
ccgagccaggaagcggccaagcctctccggggggagaagggccggcgggccgagcggccc
cggaagccccgagacgagctgggccacggcaagggcagcccccccaagcgctactcccgc
tcggacaagcgtcgtagccgctaccgcacctgcagcaccagctcagccggaagcaacaac
agcaccgagggggcccgcggggagggggaggtgggcaggaagcccccggaaaggccccgc
cctcagaagcagctctccgcctcctccaccgactccctggaagaggaccgggccgaggag
gcccccgagggcaggaggggctgcgagcacagccggcccgggcggggccaggacccccga
gcggcccaggggggcggcaggggctccgcaggcaggggctccggggcctcccagcctgaa
tggcgaaagggcggcaggccctccagggccacccccagggaccccccggaagccggggag
gggaagtcccagaaccggggccgaggaatcctggtgctgccagctaacacggacctgacc
cccagcggcacagggtcccccgaagccccccacgcagggggcgcccggctcctttttggc
ggcagcaaaggccctcgcggctggagccgggggggcacgtcccgccgcctctgggacccc
aacaacccagaccagaagccggcgctgaagagccccggggcccagctgcacttcctggac
acggacgatgagggggcccccgtgcctcgaggggagccctgccaggcccaggccccctac
taccgcttccagaactcggacaacccctattactatggaggggccccctacccttacacg
ggttaccccctgccctacccgatgggcaccggcaccgaggcctacccgggagcctattac
cccaccggctaccccaagcaggccgagccttgtggggctgggggggctggcagcgccctc
ccggccgagcccccgagcagggaggcggagcagcagaagggcccccagcagcagcagcag
gagctgggcaaggccctgcgggaggccgggcacctggagcagcagctgagcaacctcctc
tcccgggacaggctgagtccggagggcctggagaagatgggcatcctcagggcggagatg
ctgcagctgtacgagcgctgcctgctgacggacatcgaggcggccgatgcgcagaacgtg
gaccagctgctctggaagaacggcttctaccaggtcatcgagaggttccggcagctgctg
aaggagccctccgccggggagagcgcccacgagggccgcgccaggctgctccaggtcctg
gatgagggcaccgtcttcttcgacggcctcctccagaagctgcagctgacctaccagttc
aagctggaggactacatggatggcctggccgtccgcagcaaacccctgcggaagacggtg
aaatacgccctcataagtgcccagaggagcctgatttgccagggcgacatctgcaggtac
cgggagcaaggcagcgacacggccaactacgggaaggcccgcagctggtacctgaaggcc
cagcacatcgcccccaagaacggccggccctacaaccagctggctctcctggccgtctac
acgaggaggaagctggacgctgtgtattattacatgcgcagcctggctgccagcaacccc
atcctgacggccaaggagagcttgaccagcctcttcgaggagaccaagcgcaaggcagag
cagctggagcagaagagccccggggagcggggccagcggagcaagaaggtggctttccgg
ccctccggggacgatgccacccgcctggagctctggatccacccctcccacccgcgctcc
ggccagggccaggagtccagccgggaccccgagcaggacggcggcctgggcagcctcagc
cccagcgaggaggaggacgtccagatggaggccttgccggacgactcggaggaggccgag
ggcagcggtggtgagctggacatccgggagctgcgggccaagaagcaggcgctggccaga
aaggtggccgagcagcagcgccggcaggacaagatccagatatccaaagaaactgcaaca
atgctagaaatgcagaataactatgatggagtaactgaagcacttaaagaacgaaagaac
gggaaggccccaggccccgaattttataagaccctgcaggaatcaatacaatag
DBGET
integrated database retrieval system
