Thamnophis sirtalis (common garter snake): 106539848
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Entry
106539848 CDS
T06107
Name
(RefSeq) protein C9orf72 homolog isoform X1
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
106539848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsr04131
]
106539848
Membrane trafficking [BR:
tsr04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
106539848
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
C9orf72-like
Motif
Other DBs
NCBI-GeneID:
106539848
NCBI-ProteinID:
XP_013910229
UniProt:
A0A6I9X4F6
LinkDB
All DBs
Position
Unknown
AA seq
480 aa
AA seq
DB search
MSALCPPPSPAVAKTEIALSGESPLLAATFAYWDNILGPRVRHIWAPKTEQQLLSDGEIT
FLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQSE
LSFYLPLHRVCVDRLTHIIRKGRIWMHKERQHFQKSIMEGAERVEDQGQSIIPMLTGEVI
PVMELLSSMKSHSVPEEIDIRDTVLSDDDIGDSCHESFLLKAISSHLQTCGCSVVIGSSA
EKVNKIVQTLCLFLTPAERKCSRLCRNETSFKYESGLFVQGLLKDVTGSFVLPFRQVMYA
PYPTTHIDVDVNTVKQMPPCHEHIYNQRRYMRSELTAFWRATLDEEMPLDTIIYTDESFT
PDLNVFQDVQHQDTLVKAFLDQVFHLKPGLSLRSVFLAQFLLVLHRKALTLIKYIEDDTQ
KGKKPFKSLRNLKIDLDLTAEGDLNIIMAFAEKLKPGLHSFLFGQPFYTSVQEHDVLMSF
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctctctgtcctcctccttctcctgctgttgccaagacagaaattgcactaagt
ggagaatcccctttattagctgccacatttgcatattgggataatattcttggtcccaga
gtcagacatatttgggctccaaaaacagagcaacagcttctcagtgatggagaaataaca
ttccttgcaaatcatactctcaatggagaaatacttcgaaatgcagagagtggagcaata
gatgtgaagttttttgttttatctgagaaaggagtcattattgtgtccttaatttttgat
ggaaattggaatggagaccgaagtacatacggattatcaataatacttccacagagtgag
cttagtttctaccttcccctgcacagagtttgtgttgacagattgacacacattataagg
aaaggaagaatatggatgcataaggaaagacaacatttccagaagtctattatggaaggt
gcagaaagagtggaagatcaaggccagagtatcattccaatgctgacaggggaggtaatt
cctgtgatggaactcctatcatctatgaaatcacacagtgttccagaagaaatagatata
cgtgatactgtgcttagtgatgatgacattggtgacagttgtcacgaaagtttcctactt
aaggccataagttcacatctgcaaacctgtggttgctcagttgttataggaagcagtgca
gaaaaagttaataagatagtacagacactgtgcctctttctcacgccagcagagcgaaaa
tgttctcgcctttgtagaaatgaaacgtcttttaagtatgagtcaggtctatttgtgcaa
gggttactgaaggatgtgactggaagctttgtattgcctttccgtcaagtgatgtatgcc
ccgtaccctaccacgcacatagatgtagatgttaacacagtgaaacagatgcctccatgc
catgaacatatttacaatcaacgacggtacatgagatctgaactaacagcattttggaga
gctactttggatgaagaaatgcctctagataccatcatctatacggatgaaagttttact
cctgacttgaatgttttccaagatgttcagcaccaagatactttagtaaaagctttctta
gatcaggtctttcatttgaaacctggattgtctctaaggagtgtgttccttgcacagttc
ctcttagtccttcacagaaaagccttaactctcatcaaatacatcgaagatgatacgcaa
aaaggaaaaaagccttttaaatctcttcgtaacttgaagatagatctggacttaacagca
gagggcgatcttaacataataatggcttttgccgaaaagctcaaacctggtttacattcg
tttctttttggtcaacctttttataccagtgtgcaagaacacgatgtcctaatgtcattt
tga
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