Thamnophis sirtalis (common garter snake): 106543713
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Entry
106543713 CDS
T06107
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
106543713 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsr03400
]
106543713 (LIG4)
Enzymes [BR:
tsr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106543713 (LIG4)
DNA repair and recombination proteins [BR:
tsr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
106543713 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
BRCT_2
DNA_ligase_IV
DNA_ligase_A_C
RNA_ligase
LIG3_BRCT
mRNA_cap_enzyme
SSPI
Motif
Other DBs
NCBI-GeneID:
106543713
NCBI-ProteinID:
XP_013915254
UniProt:
A0A6I9XHP9
LinkDB
All DBs
Position
Unknown
AA seq
907 aa
AA seq
DB search
MASVPTSHSSSKLTVASQVPFSDLCSTLEQIQKCKSRQNKTKYFKDFLDSWRKFHDALHK
NEKDVIDSFYPAMRLILPQLERERMAYGIKETVLAKLYIELLDLPKDGNDAYKLVNFRTP
TVSQGNVGDFAMIAYFVLKERCFNKGQLTIQQVNDLLDSVSNNNAAKRKDLVKKSLLQLI
TQSSALEQKWLIRMIIKDLKLGVSQQTLLSIFHPDAVELHSVTDLEKVCRQLHNPSVSLS
DASITLFSAFKPMLASIASVRQIEKQMNNQTFYIETKLDGERMQMHKDGDVYKYFSRNGY
DYTQQFGASPLEGSLTPFIHQAFKNIQNCILDGEMMAYNPTTQTFMQKGNKFDIKKMVED
SELQTCFCVFDVLMVDDQKLGHEMLSKRYNILNTIFTPIAGRVQIVSRIQANTQKEVVDA
LNEAIDNREEGIVIKDPISIYKPDKRGEGWLKIKPEYVSGLMDELDLLIIGGYWGKGLRG
GMISHFLCAVAETPLPGEKPSKFHSICRVGSGCTMKELYDLGLKLATYWKKYDRKVPPCN
ILCGVEKPQVYIDPCNSVIVQIKAAEIVSSDMYKTECTLRFPRIERIREDKEWYECMTLD
LLEQLRSKAAGKLATKHLDVVEDEPQEKKRKTLAKNKKAIGLMEHFKAPDLSKINKVSNI
FEDVEFCIMTGTPNYSKYTLESKIAEYGGSIVQNPGPDTYCVVAGTKNVRVKNIIYSNKY
DVVRAEWLLQCFQAGKFVPWQPAFMIHMSPETKQHFAYEYDTYGDSFTADTDPQELKAVF
SRINTSEEISQDVIAGIEARYSWESSLSMFRQQTIYLSLFDEMGNSRDRINQTRCLTVEL
LLRFHGAKVVSQLEEDVSHVIGGEHSDLKKIKAIRRTFKKKFKIVSEQWIKDSVKAGELQ
NENLYIM
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagtccctacttcacattcatcttccaagctaactgtagcatcacaagtccca
ttttcagatctctgttcaacattagaacaaattcagaagtgcaaatctcgacaaaacaaa
acaaagtatttcaaggattttctagattcctggaggaaatttcatgatgctcttcataaa
aatgagaaggatgtgatagattctttttatcctgcaatgaggcttattcttccacagttg
gaaagagagaggatggcctatggaattaaagaaacagtgcttgctaagctctatattgaa
ttgctagatttacccaaagatggaaatgatgcttacaaacttgtaaattttcgaacaccc
actgtctcacaaggaaatgttggagactttgctatgattgcctactttgttttaaaagaa
agatgcttcaacaaaggtcaactgaccatacaacaagtaaatgatcttctagattctgtt
tctaataataatgctgccaaaaggaaggatctagttaagaagagccttcttcagttaata
actcagagctcagcactagaacagaagtggttgatcaggatgatcataaaggatttgaaa
cttggtgtcagccagcaaaccttactttctattttccatcctgatgctgtagaattgcac
agtgtcacagatttggaaaaggtttgtaggcagctgcataatccttcggtgtcacttagt
gatgcttctattacattattttctgcctttaaaccaatgcttgcttctattgccagtgtg
cgccaaattgagaaacaaatgaataatcagactttttacatagaaaccaaattagatggt
gaacgaatgcagatgcacaaagatggagatgtttacaaatacttttccagaaatggatat
gattatactcagcagtttggtgcttctcctctcgaaggttcattgactcctttcattcat
caggcctttaaaaatattcaaaactgcattctggatggtgaaatgatggcctataatcct
accacccagacatttatgcagaaaggaaacaagtttgacatcaaaaagatggtggaggat
tctgaattacaaacatgtttctgtgtatttgatgttcttatggtcgatgaccaaaagttg
ggtcatgagatgctgagcaaaagatacaatatattaaatacaatttttacaccaatagct
ggtcgagtgcagattgtttctagaattcaagccaacacacagaaagaagtagtagatgcc
ctaaacgaagccattgataacagagaagaaggaattgtaataaaagaccccatatcaatt
tacaagccagataagcgtggggaaggatggctgaagatcaagccagaatatgtcagtggg
ttgatggatgaactggaccttttaattattggaggctactggggtaaaggtcttcgtggt
ggcatgatatctcattttttatgtgcggttgctgagactcctttgcctggtgaaaaacca
tctaaattccattccatttgtcgtgttggttccggttgcactatgaaagaactgtatgat
cttggcttaaaattagccacatattggaaaaaatacgataggaaggttccaccttgtaat
atcttatgtggtgttgagaagcctcaagtctatattgatccttgtaattcagtgattgtt
cagattaaagctgctgaaattgtgagtagtgatatgtataaaacagaatgtacattacgt
tttccacgcattgaaagaataagggaagataaagaatggtatgaatgtatgactcttgac
cttctagaacaactcagaagtaaagctgctgggaagcttgctacaaaacaccttgatgta
gttgaggatgaaccacaagaaaagaagcgtaaaactctggcaaaaaataaaaaagcaatt
ggtttaatggaacattttaaagcaccagatctttctaaaataaacaaagtttctaatatt
tttgaagatgttgagttttgtattatgactgggacaccaaattattcaaagtataccttg
gaaagcaaaatagcagaatacggtggcagcatagttcaaaatcctgggccggatacctac
tgtgttgtggcaggaactaagaatgttagagtgaaaaatattatttattccaacaaatat
gatgttgtgagagcagaatggcttttacagtgtttccaagctggaaagtttgtgccgtgg
caacctgcttttatgattcacatgtctcctgaaacaaagcaacattttgcttatgaatat
gatacttatggtgatagtttcacagctgatactgatccacaagagttgaaggcagtgttc
tcaagaattaatacctctgaagagatttctcaagatgtgattgctggcatagaagcccgt
tattcttgggaaagttccctaagtatgttcaggcaacaaaccatttacctgagtcttttt
gatgaaatgggcaattcaagggacagaataaatcaaaccagatgtttaactgtagagttg
ctacttcgttttcatggagcaaaagtagtgtcacagcttgaggaagatgtatcccatgta
attggtggagaacattctgatttgaagaaaataaaagccatcagaaggacttttaagaaa
aagtttaaaattgtttctgagcaatggataaaggattctgtaaaagctggagaattacaa
aatgaaaacttgtacataatgtaa
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