Thamnophis sirtalis (common garter snake): 106547766
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Entry
106547766 CDS
T06107
Symbol
PDGFRB
Name
(RefSeq) platelet-derived growth factor receptor beta
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04010
MAPK signaling pathway
tsr04020
Calcium signaling pathway
tsr04510
Focal adhesion
tsr04540
Gap junction
tsr04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
106547766 (PDGFRB)
04020 Calcium signaling pathway
106547766 (PDGFRB)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106547766 (PDGFRB)
04540 Gap junction
106547766 (PDGFRB)
09142 Cell motility
04810 Regulation of actin cytoskeleton
106547766 (PDGFRB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
tsr01001
]
106547766 (PDGFRB)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
tsr04090
]
106547766 (PDGFRB)
Enzymes [BR:
tsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
106547766 (PDGFRB)
Protein kinases [BR:
tsr01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
106547766 (PDGFRB)
CD molecules [BR:
tsr04090
]
Proteins
106547766 (PDGFRB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
I-set
Ig_3
ig
Ig_2
VEGFR1-3_N_Ig-like
VEGFR-1-like_Ig-like
C2-set_2
V-set
Motif
Other DBs
NCBI-GeneID:
106547766
NCBI-ProteinID:
XP_013920495
UniProt:
A0A6I9YAI7
LinkDB
All DBs
Position
Unknown
AA seq
1067 aa
AA seq
DB search
MMPAFFRKMLVFLVLFLTSAKEISSLEITPSAHEVVLNLYTDFTVKCSGHKEVIWKTDNK
HTKLDTVLEKRGTIFTNTLTLRNLTGLNTGEYSCSDDQHLDGKAIYVFVPDLSMPFLPNN
QEDTFVFSTGYSEVIIPCRVTNPNATVSLHEKRVNDPAPGVYFPQQGFKGQFEDKAYICK
ATIEDEEFESETFYVYNLQVPPPTSFINVSISALQTILKQGENIVVTCTVRGVELIGYIW
SYPGQTVGKEVKPVTHIAPGVKHYTSSVLTIPNAELDDQGLYACEATDTYFGQKEEKNIF
IRVIERGFVTFHTVLNETVFAELHKSHTFLIQIEAYPTPTIVWFQNNKTLNSESNSDFAI
NSRNLSETRYQTTLTLVRVKASEGGLYTVRAFHEDDFKELSFYLQINVPATVIELRDSSN
KTNGEQTVICTTEGMPQPKVTWYTCNNDKWCVGKTTMILGNTSEEMNLQTNFTYEDDRKV
YIVTSKLHFHRVDEPIFIQCAAQNLLGAHTQQITLVPYNPPFKVIVISVIVAFVILMVLF
LVILIFLWRKKPRYEIRWKVIESVSSDGHEYIYVDPMQLPYDSSWEVPRDRLVLGRTLGS
GAFGRVVEAIAHSLSHSQSTMRVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLL
GACTKGGPIYIITEYCRNGDLVDYLHRNKHTFLQCYSEKTKQEAELYGNGMRLDRLQSHA
SGSIESDGGYMDMSKDESLDYVPMSDMKGEIKYVDIDSSNYGATYELDSYSPSASEKVTL
ISESPLLSYIDLLGVSFQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDI
MRDSNYISKGNTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNE
QFYNAIKRGYRMSKPTHASNEIYEIMQKCWEEKFEIRPSFSQLVVLMGNLLTDSYKKKYQ
QVNEEFLKSDHPAIMRTRPRNTEFSPSRSTANDSVSSSSVLYTAVEQNGVDNDYIIPLPD
PKPEGDNNHPPEASSSRASSTLNEANTSSTISCDSPLAPEEEEQESI
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctgctttctttcggaagatgctggtcttcttggtcctcttcctcacaagtgcg
aaagaaatcagctccctggaaattactcccagtgcccacgaagttgtcctcaatctctac
actgattttaccgtgaaatgttcaggccacaaggaggttatctggaaaacagacaacaag
cataccaaattagacactgtcctggagaaaaggggcaccatttttaccaatacccttacg
ttaaggaacttgactggtttgaacacaggtgaatattcctgttccgacgatcaacacctg
gatggaaaggccatctacgtttttgtaccagatctctccatgcctttcctaccaaacaac
caggaagacacctttgtgttcagcacaggctacagtgaagtcattattccttgccgtgtg
acaaaccccaatgccacggtctctcttcatgaaaagagggttaatgatccagcccctgga
gtgtattttccacagcaaggctttaaagggcagtttgaagacaaggcctacatctgcaag
gcaacaatagaagatgaagagtttgagtctgaaacattctatgtttacaatctccaagtt
cctcctcctacatccttcatcaatgtttctatcagtgcgttgcaaactattttgaaacaa
ggtgaaaatatcgttgtgacatgtacagtaagaggcgttgagctgatcggttatatctgg
agttatcctggacagacggtaggcaaggaggtaaaacccgtgacacatattgctccagga
gtcaaacattatactagttccgtcctaaccattccaaatgcagaattggatgatcaaggt
ctatatgcatgtgaggccacggacacgtattttggacaaaaagaagaaaaaaatatcttt
atcagagtgattgagcgtggctttgtgacttttcacactgttctgaatgagaccgtattt
gcagaactgcacaaaagtcacacctttttgatacagattgaagcctatccaactccaacc
attgtctggtttcagaataacaagaccctgaattctgagagcaacagtgattttgctatc
aacagcaggaatttgtcagaaaccaggtatcaaactactctgaccctcgtaagggtgaaa
gcaagtgaaggaggtttgtacactgtccgagcatttcacgaagatgacttcaaagagctc
tccttttatttgcagattaatgtcccagctacagtgattgaactgagagacagtagcaac
aaaacaaatggtgagcaaacagtgatttgtactacagaaggaatgccccaaccaaaggtt
acctggtatacctgtaataatgacaaatggtgtgtggggaaaactactatgatcctggga
aacacctcagaagaaatgaatctgcaaacaaatttcacttatgaagatgaccgaaaagta
tacattgtgacaagcaagctccatttccacagagtagatgaacctatctttatccaatgt
gcagctcaaaatctccttggtgcacacactcagcaaatcaccctggttccatataatcca
ccttttaaagtgatcgttatttcagtaatcgtggcttttgtgattctcatggttcttttc
ctggtgatcctcattttcttgtggcgaaaaaagcctcgatatgaaattcgctggaaggtg
attgagtccgtcagctccgatgggcatgaatatatctacgtggaccctatgcagttgcct
tacgattccagctgggaagtcccaagggacaggctggttttagggcgtacgttgggctct
ggagcctttggccgtgtggtggaagcaattgctcacagcctcagccattcccagtccacc
atgagagttgctgtgaaaatgctcaagtccacagcccgaagcagtgaaaagcaggctctg
atgtcagaactgaagatcatgagccaccttgggcctcacttgaacattgtcaacttgctt
ggtgcttgcaccaaaggaggtcccatctacatcataaccgaatattgtcgcaatggagac
ctggtggactatcttcacaggaacaaacacaccttcctgcagtgctacagtgagaagacc
aaacaagaagcagaattatatgggaatggcatgcgtctggaccggctgcaaagccatgca
tccggatcaatagaaagcgatgggggctacatggacatgagtaaggatgaatcactggat
tatgtgcccatgtctgacatgaagggtgaaatcaagtatgtagacattgattcttccaat
tatggcgcgacctatgagctggacagctattcgccttcagcttcagaaaaagtgaccttg
atcagcgagtctcccctcctcagctatatcgatcttcttggagttagcttccaagtggct
aagggaatggagttcttagcttctaaaaactgtgtgcaccgtgatctggctgcaagaaac
gtactgatctgcgaagggaaactggtgaagatctgtgactttggcctagccagggacatc
atgcgggattcaaattatatttccaaaggaaataccttcttgcctttgaaatggatggcc
cctgagagcatcttcaacaacctctacactaccttaagtgatgtatggtcttttgggatt
cttctatgggaaatattcactctaggtgggacgccatatcctgaattgcctatgaatgag
caattctataatgctattaaacgtggctaccggatgtccaaacctacccatgcctccaat
gaaatctatgaaattatgcagaaatgctgggaagagaagtttgagatccgaccatctttc
tctcaactggtagtacttatggggaacctgctaacagacagttacaagaagaagtatcaa
caggtcaatgaagagttcttgaaaagtgatcaccctgctattatgcgtacaaggcccaga
aacacagaattcagtccttctaggtccactgcaaatgacagtgtcagttcaagttctgtc
ctctatacagctgtggagcagaatggagtggacaatgattatatcattcctttgcctgat
cctaaaccagagggagacaataaccatcccccggaggcctctagcagcagagcaagttca
accctgaatgaagcaaacacttcatctactatatcttgtgacagtcctttagcccccgag
gaagaagaacaagaaagcatctaa
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integrated database retrieval system
