Thamnophis sirtalis (common garter snake): 106548408
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Entry
106548408 CDS
T06107
Name
(RefSeq) short transient receptor potential channel 6-like
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tsr04040
]
106548408
Ion channels [BR:
tsr04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
106548408
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
PKD_channel
Ank
Ank_5
Ank_4
Cmr1_C
Motif
Other DBs
NCBI-GeneID:
106548408
NCBI-ProteinID:
XP_013921244
UniProt:
A0A6I9XYD0
LinkDB
All DBs
Position
Unknown
AA seq
807 aa
AA seq
DB search
MSHNQVYAPRGNGSPVVGAPRNDSQDYLLMDSEAYEENCLAPYAYYPNRGAENRHGFRQQ
TVAREKGRRSAIRGPAYMFNDHSTSLSIEEERFLEAAEYGNIPVVRKMLEECTSLNVNCV
DYMGQNALQLAVSNEHLEITELLLKKENLSRVGDALLLAISKGYIRIVEAILNHPAFAEG
KRLATSPSQSELQHDDFYAYDEDGTRFSHDVTPIILAAHCHEYEIVHILLRKGARIERPH
DYFCKCSECNKKQKNDSFSHSRSRINAYKGLASPAYLSLSSEDPVMTALELSNELAVLAN
IEKEFKNDYKKLSMQCKDFVVGLLDLCRNTEEVEAILNGDVELNHGEHGRPSLSRLKRAI
KYEVKKFVAHPNCQQQLLSIWYENLSGLRQQTMAVKFLVVLAVAVGLPFLSMAYWIAPCS
KLGRIMRGPFMKFVAHAASFTIFLGLLVMNAADRFDGIKLKPNETMIDNAKQLFRMKTSC
FSWMEMLIISWVIGMIWAECKEIWSQGPKEYLFELWNMLDFGMLAIFAASFIARFMAFWH
ASRAQNIVDADTELKDLSDATLKPSIKYYTLARIDWDPSDPQIISEGLYAIAVVLSFSRI
AYILPANESFGPLQISLGRTVKDIFKFMVIFIMVFVAFMIGMFNLYSYYLGAKQNEAFTT
VEESFKTLFWAIFGLSEVKSVVINYNHKFIENIGYVLYGVYNVTMVIVLLNMLIAMINSS
FQEIEDDADVEWKFARAKLWFSYFEEGRTLPVPFNLVPSPKSLLYLSLRIKTWIFKILFC
HATGFQEDAEMNQVNQLPHTRMTYIFL
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacaaccaggtctacgcgccgcgggggaacggctcgccggtcgtcggagccccc
aggaacgacagccaggactatttgctgatggattccgaagcgtatgaggagaactgcctg
gcgccttacgcttactaccccaatagaggtgctgagaatcgtcatggcttccgccaacag
actgtagctagagagaaaggcaggagatctgctattcggggcccggcatatatgtttaat
gaccactcaaccagcctttctatagaggaagagcgttttctggaagcagcagaatatggc
aatatccctgtagtccgtaaaatgttggaggaatgtacatcgctcaacgtgaactgtgtg
gattacatgggccagaatgcattacaactggctgtgtcaaatgagcacctggaaatcacg
gagcttttacttaagaaggaaaacttgtcacgggttggagatgcgctactcttagccatt
agcaaaggctacatacgaatcgtggaagccattttgaaccatcccgcgtttgcagaaggg
aagaggttggctacaagtcccagtcaatcggagttgcaacatgatgatttttatgcctac
gatgaggacggaactcgcttctcccatgacgtgacccccattatcctcgctgcccactgc
catgagtatgaaattgtgcacatcctgctgaggaaaggagctcggattgagaggccgcac
gattatttctgcaaatgcagcgaatgcaacaagaagcaaaagaatgactctttcagtcat
tctagatccaggatcaatgcctacaaaggtctggcgagtccagcttatctgtcattgtca
agtgaggacccggttatgactgccttggaactaagcaatgagttggctgtgcttgctaac
atcgaaaaagaattcaagaacgattacaaaaaattgtcaatgcagtgcaaggactttgtg
gttggacttcttgatttgtgcagaaacacagaagaagtggaagctatcctcaacggagat
gttgaattgaaccatggggagcatggacgtccaagtctgagccgcttaaaacgggctata
aaatatgaagtcaaaaaatttgttgcacatccaaactgccagcagcagcttctctcaatc
tggtacgagaatttgtcgggtttacggcaacagaccatggcagtgaagtttttagtggtt
cttgctgtagctgttggattgccattcctttctatggcctattggattgctccatgtagt
aagttgggtagaatcatgcgtgggccctttatgaaatttgtggcccatgcggcctctttc
accattttccttgggctcctggtcatgaatgcagcagacagatttgatggcatcaaacta
aagcccaacgaaaccatgatagataatgcaaaacagctgtttcgaatgaagacgtcgtgc
ttctcctggatggaaatgctgatcatctcatgggtaataggtatgatatgggctgaatgt
aaagaaatttggtcccaaggtcccaaggaatatctgtttgagttgtggaatatgctagat
tttggtatgttggctatttttgcagcctcattcattgcaaggttcatggccttctggcat
gcttctagagcccagaatattgttgacgctgatacagagttgaaggacttgtcagatgca
acattgaagcccagcataaagtactacactttggcaagaatagactgggatccatctgac
cctcaaatcatatccgaaggcttatatgcaattgctgtggttttaagtttctcacgcatc
gcctatattttgccagccaacgaaagctttggacccttgcagatatcacttggtagaact
gtgaaagacatattcaagttcatggtcatattcatcatggtttttgtggccttcatgata
ggaatgtttaatctctactcctattacttgggagcaaagcagaatgaagcatttactaca
gtggaagaaagcttcaagactttgttctgggcaatatttggactttctgaagtaaaatct
gtggtcataaattataaccacaaatttattgaaaatattggctatgtcctttatggtgtt
tataatgtcaccatggttattgttttgttgaacatgcttatcgcaatgattaatagttcc
ttccaggaaattgaggatgatgctgatgtagaatggaagtttgccagagcgaaactctgg
ttttcttattttgaggaaggcagaacacttcctgtccctttcaatctggttcccagcccc
aaatctctgctgtacctctccctcagaataaagacgtggatttttaaaatactgttttgc
cacgcgacaggtttccaggaggatgctgagatgaatcaggtaaaccagctgccacatact
agaatgacatatatttttctgtag
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