Thamnophis sirtalis (common garter snake): 106551420
Help
Entry
106551420 CDS
T06107
Name
(RefSeq) sodium channel protein type 4 subunit alpha-like
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tsr04040
]
106551420
Ion channels [BR:
tsr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
106551420
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
106551420
NCBI-ProteinID:
XP_013925004
UniProt:
A0A6I9YLV2
LinkDB
All DBs
Position
Unknown
AA seq
1875 aa
AA seq
DB search
MAAVPYIPGPDCLRPFTRESLKAIEKQIAEREAEKLKNQHEEVLDEEKQPKPRCDLEQGK
GLPLIYGEPPPELIGVPLEDLDTFYSDQKTYIILNKGNTIFRFTAAPALYMLDPFNPIRN
GAIKVLTHSLFSMFIMITILANCVFMTMSNPPIWAKDVEYTFTGIYTFEAMIKVLARGFC
IDSFTFLRDPWNWLDFSVIVMAYVTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGA
LIQSVKKLADVMILTVFCLAVFALIGLQLFMGNLRQKCVRWPPFSNDTLQDALGPSFTSD
SLQDVLWRDPLDNSTLNDNFTLTGTFDWHEYINNEDNFYFLDGALDALLCGNSSDAGQCP
EGFLCMKAGRNPNYGYTSYDTFSWAFLSLFRLMTQDYWENLFQLTLRAAGKTYMIFFVVI
IFLGSFYLINLILAVVAMAYAEQNDATLQEEKEKEEEFQQMVEQLKKHQEEQQRLLQAQT
ATNSSAESIIVEKKQKGELDEKAQSDQEGPEDCNGRAIPRLVLERSATVRESNPREEHEK
SDQNHLYVDGVEGKGLEKRVGSAVSVVSSTLEELEEAHQKCPPWWYKFAHAVLIWNCCPV
WVKLKHIIKLIVLDPFVDLGITICIVLNTVFMAMEHYPMTEEFNNVLNVGNLVFTGIFTA
EMVLKLIALDPYEYFQIGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLMRVFKLAKSW
PTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYIECVCKISSDCELPRWH
MHDFFHSFLIVFRILCGEWIETMWDCMEVAGQPMCLIVFLMVMVIGNLVVLNLFLALLLS
SFSADSLAGSDDDSEMNNLQIAIGRINRGIDFVKKHVLLLLHRELKEKTELSSEEPDDSK
KENFVLNHMDNLNHVDTGQDFKSEYMDGIVKNEQLIDELGQMNFINNPNLTINVPIASEE
SDLYDETDTGEETADDIKKPLSDGTDSSICSTVDYKPPDPSEEKAEVEENMENDDPEECF
TEACVQRCPFLYVDIKTEKGAKWWNLRKACFKIVEHNWFETFIIFMILLSSGALAFEDIY
IERRHTIRTILEYADKIFTYVFILEMLLKWVAYGFKVYFTNAWCWLDFLIVDVSLISLTA
NWLGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIF
SIMGVNLFAGKYYRCVNTTTGDLFEIEHVNNKSDCINLINIENATDVRWVNVKVNFDNVG
LGYLSLLQVATFKGWMDIMYAAVDSREQEEQPQYEVNLYMYIYFVIFIIFGSFFTLNLFI
GVIIDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKLGSKKPVKPIPRPQNKYQGMIFDFVT
QQAFDIIIMILICLNMVTMMVETDDQSQTKITILAQINLVFIIIFTSECFLKMIALRHYF
FTNGWNIFDFVVVILSIVGLVLSDIIEKYFVSPTLFRVIRLARIGRALRLIRGAKGIRTL
LFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFAYVKKESGIDDIFNFETFGNSIICLFE
ITTSAGWDGLLNPILNSVPPDCDPHLDNPGSHVKGDCGNPSMGICFFCSYIIVSFLIVVN
MYIAIILENFNVATEESSEPLCEDDFEMFYETWEKFDPDATQFIAYSTLSDFVDTLQEPL
RIAKPNKIKLITLDLPMVPGDKIHCLDILFALTKEVLGDSGEMDALKQSMEEKFMAANPS
KVSYEPITTTLKRKQEEVCAIKIQRAFRRYLLKRSVKQASYLYRQSQDMDIPKENAPEKE
GMIANKMNAMYSSQVEVEKSPETAPSPVLEPLSSPEIKKDAGEMKEQDNNGKEGDDSGKT
KKSENAKRGVKESSV
NT seq
5628 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgtgccctacatcccaggtccggactgcctacgcccttttacccgtgagtcc
cttaaagctatagagaaacagattgcagagcgggaagctgagaaattgaagaaccaacat
gaggaggttcttgatgaagaaaaacagccaaagccccgttgtgacttggaacaaggaaaa
ggcctcccactcatttacggggaacctcctccagaactcattggagttcctttggaagat
ttggatacattttacagtgatcagaaaacatacatcatcctcaacaaaggaaataccata
ttccggttcactgccgctccggctctctacatgttggatccattcaaccctatccggaat
ggtgctatcaaagtgcttacacattcattgttcagtatgtttatcatgataaccatctta
gccaactgtgtcttcatgactatgagtaaccctccaatatgggccaaagatgtggaatac
acctttactggcatttatacttttgaggctatgatcaaggtacttgctcggggattctgt
attgacagctttacattcctgcgagatccttggaattggctggatttcagtgtcatcgtc
atggcttatgtcacagagttcgtagacttgggcaacgtctctgctctacggacattccgt
gttcttcgagcgctaaaaactatcactgtcattccaggtctaaaaacaattgtgggagct
ttgatccagtctgtgaagaagctcgctgatgtgatgatcctcactgtgttctgtttggcg
gtctttgccctcattggcctgcaactgttcatggggaacttgcgacaaaagtgtgttcga
tggccacctttttccaatgacaccctgcaggatgcattaggcccatccttcaccagtgac
tccctgcaggatgtcttatggagggatccacttgacaacagcactctgaatgacaatttt
actctcactgggacctttgactggcatgagtacattaacaatgaagacaatttctatttc
ctcgatggtgcacttgatgctttgctctgtgggaacagctctgatgctggacagtgtcca
gaaggatttctctgcatgaaagctggccgaaacccaaattacggctatacaagctatgac
accttcagctgggctttcctttcactttttcgcctcatgactcaggactattgggagaat
ctcttccaattgactttgcgagcagctgggaaaacatacatgatcttctttgttgtgatc
atattcttgggctctttctatctcatcaatttaatcctggctgtggtggcaatggcctac
gcagaacagaatgatgccaccttacaggaagaaaaagaaaaagaagaagagttccagcag
atggtagaacagctgaaaaagcatcaagaggagcaacaaagactgcttcaagcacagaca
gcaactaacagttctgcagaaagcattatagtggaaaaaaagcaaaaaggagaattagac
gaaaaggctcagagtgatcaagagggaccagaagattgcaatggtcgtgccatcccacgt
ttggtgttggagagatcagctacagtacgtgagtcaaatccaagggaagaacatgagaaa
tctgatcaaaaccatttgtatgtggatggtgttgaggggaagggtttggagaagcgagta
gggagtgcagtcagtgtggtctccagtactcttgaagaactggaagaggcccaccagaag
tgcccaccatggtggtataagtttgcccacgcggtattaatatggaactgttgtccagtt
tgggtgaagctaaagcacattattaagctcattgtcctggacccttttgttgatttgggg
atcaccatctgcattgtccttaatactgtcttcatggccatggaacactacccaatgact
gaagagttcaacaatgtattgaatgtgggcaatctggtattcacagggatattcacagct
gagatggtgcttaaattgattgctctagatccttatgaatatttccagataggatggaac
atctttgacagcattattgttactctcagcttagttgagcttggtcttgctaatgttcaa
ggtctgtctgtactacgatccttccgtctgatgagagttttcaagcttgccaaatcttgg
ccaactctcaatatgttaattaagatcattgggaactcagtaggtgccttgggaaacctc
actctagtcctggccatcatagttttcatctttgctgtggtgggcatgcagctatttggg
aagaactacatagagtgtgtctgtaaaatttccagtgactgtgagctgccacgctggcac
atgcatgacttctttcactcctttcttattgtcttccgcatcctctgtggagaatggatt
gagaccatgtgggattgcatggaagtggctggacagcccatgtgcctcattgtctttcta
atggtcatggtcatcgggaatttagtggtactcaacctgtttttagctttgctgcttagc
tccttcagtgccgatagcctggcaggatccgatgatgatagtgagatgaacaatttgcaa
attgcaattggcaggatcaaccgaggaattgattttgtaaagaaacatgtcctgctgctg
cttcacagagaactgaaagagaaaacagagctatcatctgaggaaccagatgacagtaaa
aaagaaaactttgttctcaaccacatggacaatcttaaccatgtggacacaggccaggat
ttcaagtctgaatacatggatggaatagtaaaaaacgagcaactcattgatgaactggga
caaatgaacttcattaataatcccaacctgaccataaatgtacctatagcatctgaagag
tctgatctttatgatgaaactgatacaggtgaagaaactgctgatgacatcaagaaacca
ctatcggatggaacagattcatccatatgcagcaccgtggattataagcctccagatcct
tcggaggagaaagcagaagttgaagaaaatatggagaatgatgatccagaggaatgcttc
actgaagcctgtgttcaaaggtgtcctttcctgtatgttgatatcaaaacagaaaaggga
gcgaagtggtggaatcttcggaaagcatgtttcaaaattgtagaacacaattggtttgag
accttcattatcttcatgattctccttagcagtggtgctctggcttttgaagatatctac
atagaacgcagacatacaattcgcaccatcttggagtatgctgataagatcttcacatat
gtttttattcttgagatgctccttaaatgggtagcctatggattcaaggtctactttacc
aatgcttggtgctggctggacttcctcattgttgatgtctccctaattagtttaacagca
aactggctaggctattcagagctgggagctatcaaatccctgaggacactccgagcattg
aggccgcttcgggctttatccagatttgaaggcatgagagtggttgtaaatgctcttttg
ggggccatcccctccatcatgaacgtcctcttggtatgcctgatcttctggctcatcttc
agcattatgggggtgaacctctttgcagggaagtactatcgctgtgtcaataccaccaca
ggtgatctctttgaaatcgaacatgtaaacaacaaaagtgactgcatcaaccttatcaat
attgaaaatgccactgatgtccgttgggtcaatgtcaaagtcaattttgacaatgtggga
ttaggctatctctcccttttgcaagtggccactttcaagggctggatggacatcatgtat
gcagctgttgactcccgtgagcaggaggaacagcctcaatatgaagttaatctctacatg
tatatctattttgtcatctttattatctttgggtcattcttcactctcaatctttttatt
ggtgtaatcattgacaatttcaaccagcaaaaaaaaaagtttggaggcaaagatatcttc
atgacagaggaacaaaaaaaatactacaatgccatgaagaaactaggttcaaaaaaacca
gtgaagcccattccaagaccccagaacaagtatcaagggatgatctttgactttgtgact
cagcaagcttttgatataatcatcatgatcctcatttgtcttaacatggtaacaatgatg
gtggaaacagatgaccaaagccaaaccaagataactatccttgctcagatcaacttggtc
ttcattatcatcttcacatctgaatgttttctcaagatgattgccctgaggcactacttt
ttcactaatggctggaacatctttgattttgttgtggtcattctctccattgtaggactt
gttctctcggatattatcgaaaaatacttcgtatcgcccactctcttcagagtcatccga
ttggctagaattgggcgtgctcttcggttgatcaggggagcaaaaggcatccgaactctg
ctctttgctttgatgatgtctctgccagcattattcaacattggcctcctactatttctg
gttatgttcatttattccatttttggaatgtcaaactttgcttatgttaagaaggaatct
ggcattgatgacattttcaacttcgagacgtttggtaacagcatcatttgtctttttgag
atcaccacatcagctggttgggatggcttattgaaccccatcttgaacagtgttccccca
gattgtgatcctcatctggacaaccctggcagtcatgtgaaaggtgattgtggcaatcct
tccatgggcatctgctttttttgcagttatatcattgtctctttcttgattgtggttaac
atgtacattgccatcattttggagaattttaatgtagccacagaggagagcagtgagcct
ctctgtgaagatgactttgaaatgttctatgaaacatgggagaagtttgatcctgatgcc
acacaatttattgcttacagcacactttctgattttgtggataccctgcaagagccgctg
agaattgctaaacccaataaaattaaactgatcactctggacttgcctatggttcctgga
gataaaatacattgcttggacattctctttgccctgacaaaagaagttttgggagactct
ggagaaatggatgccctgaagcaatcaatggaggagaaatttatggctgcaaatccttcc
aaagtatcttatgagcccattaccacaacactaaaacgaaaacaggaagaagtctgtgcc
atcaaaatccaaagagcattccgccgatatctgttaaaacggtcagtgaaacaggcctca
tatctgtacaggcagagtcaagatatggacataccgaaagaaaatgccccagagaaagaa
ggaatgattgcaaacaaaatgaacgcaatgtatagctcacaagtagaagtggaaaagtcc
ccagaaacagctccatctcctgtacttgagccgctaagcagccccgagattaaaaaggat
gctggtgaaatgaaagagcaggacaataatggcaaggagggagatgactctggaaaaact
aaaaaaagtgagaatgctaaacgtggtgtaaaagagtcatctgtataa
DBGET
integrated database retrieval system
