Thamnophis sirtalis (common garter snake): 106552766
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Entry
106552766 CDS
T06107
Symbol
SLIT1
Name
(RefSeq) slit homolog 1 protein isoform X1
KO
K06838
slit 1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
106552766 (SLIT1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tsr00536
]
106552766 (SLIT1)
Glycosaminoglycan binding proteins [BR:
tsr00536
]
Heparan sulfate / Heparin
Axon guidance molecules
106552766 (SLIT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
Laminin_G_2
Laminin_G_1
EGF
LRRNT
LRRCT
LRR_9
hEGF
LRR_1
LRR_14
EGF_TEN
EGF_Teneurin
EGF_3
EGF_2
EGF_DL_JAG
Motif
Other DBs
NCBI-GeneID:
106552766
NCBI-ProteinID:
XP_013926598
UniProt:
A0A6I9YQ08
LinkDB
All DBs
Position
Unknown
AA seq
1533 aa
AA seq
DB search
MAPKRRAGSGGVWLRAGACLLAWAALCQVRASACPTPCACSGTTVDCHGLGLRAIPKNIP
RSAERLELNGNNITRISKHDFAGLKQLRVLQLMENQINVVERGAFDDMKELERLRLNRNQ
LHTMPELIFQNNQALSRLDLSENLLQAVPRKAFRGATDLKNLQLDKNHISCIEEGAFRAL
RGLEVLTLNNNNISSIPISSFNHMPKLRTFRLHSNQLICDCHLGWLSQWLRQRPTIGLFT
QCAGPPSLRGLNVAEIQKNEFSCSGQDDATRTHICSFSSGSCPAMCTCSNGIVDCRGKGL
TAIPANLPETMTEIRLELNGIKSIPPGAFSSYKKLRRIDLSNNQISEIAPDAFQGLRSLN
SLVLYGNKITELPKGVFGGLYALQLLLLNANKINCIRADAFADLQNLSLLSLYDNKIQTL
AKGTFATLRAIQTLHLAQNPFICDCNLKWLADFLRANPIETSGARCASPRRLANKRIGQI
KSKKFRCSPKEQYFIPGTENYHLNSECHSDVVCPAKCRCEANVVECSNLRLTKIPERLPQ
ATAELRLNNNEITVVEATGIFKKLPHLKKINLSNNKVSEIEDGAFEGASSVSELHFTANQ
LESVRSSMFRGLDGLRTLMLRNNRINCIHNDSFTGLRNVRLLSLYDNQISIISPGAFDTL
QSLSTLNLLANPFNCNCHLAWLGDWLRKRKIVTGNPRCHNPDFLRQIPLQDVAFPDFRCE
EGQEETICFPRSQCPQECTCLDTVVRCSNKHLKSLPKGIPKNVTELYLDGNQFILIPGQL
STFRYLQLVDLSNNKISFLSNNSFTNMSQLTTLILSYNALQCIPSLAFEGLHSLRLLSLH
GNDISTLPEGIFADVTSLSHLAIGANPLHCDCHIRWLSSWVKTGYKEPGIARCAGPADME
GKLLLTTPAKKFECQGPPLPTIQAKCNPCISNPCQNRGSCQRDPLGSYHCVCPSGYKGKH
CHLSVDGCSERPCENGGTCLSQEGDGASFKCTCVDGFEGPRCNLKTNSCNNSCKNGGTCV
NGSTNHTCLCLPFYTGTYCEQSVDVCSPELSPCQHNAICRVSLDGPKCECMPGYVGDNCS
VDYNDCLDHQCQNNAKCFDEPNGYSCLCTGGFSGQLCEIPPHGSFQSSPCERVECQNDAN
CVELGNRALCQCLPGFGGLKCEKLLSVNFVDRDTYLQFTDLQNWPTANITLQVSTAEDNG
ILLYNGDTDHMAVELYHGHVRVSYDPGSYPSSALYSAETINDGQFHTVELVTFERMVNLS
IDGGDPMTMDSFGKAHTLNSEAPLYVGGMPVDVNSAAFRVWQILNGSSFHGCIRNLYINN
ELQDFTKTQMKPGVVPGCEPCRKLYCMHGICQPNTAHGPICYCESGWTGPHCDQPITNPC
QGHKCEHGICMPLDALSYSCQCQDGYKGALCNQEVELRNPCKSLECVHGQCQISDAGEAY
CECNSGFDGDLCDQESECRGEAVRDFHQVQRGYAICQTTRPVSWMDCQGSCPGLGCCGGL
RLKRKKYTFECSDGSSFVEEVEKPSKCGCSHCM
NT seq
4602 nt
NT seq
+upstream
nt +downstream
nt
atggctccgaagcggcgagcggggtcaggcggcgtgtggctgcgggcgggagcctgcctc
ttggcctgggcggccctttgccaggtccgggcgagcgcttgccccacaccgtgcgcctgc
agcggcaccacggtagactgtcacgggctggggctccgcgctattcccaagaacatcccg
aggagcgcagagaggctggaactgaatggaaacaatatcactcggatcagtaaacatgac
tttgctgggctgaagcagctgagagttctgcagctgatggaaaaccagatcaacgtggtg
gaacgaggagcgtttgatgacatgaaagaactagagcgactacggctaaataggaaccag
ctacacactatgccagagctcattttccagaataaccaagcattgtcacgactagacctg
agtgagaaccttcttcaggctgtgcccagaaaggcattccgtggagccactgatctcaag
aatttgcagctggacaagaaccatataagttgcattgaagaaggggcctttcgtgctctc
cgtgggctggaagtattgactttgaacaacaacaatatcagctccatccccatctccagc
ttcaaccatatgcccaaactgcgtactttccgcttgcactccaatcagctgatctgtgat
tgtcatttgggttggctttcccagtggctccgccagcgacctactattgggctcttcaca
caatgtgctggtcctccatccctccgtggtctaaatgttgcagaaatccaaaagaatgaa
ttcagctgctcaggccaagatgatgccaccagaactcatatctgcagtttttcatctggg
tcctgtcctgccatgtgtacttgtagcaatggcattgtagattgtcgtggcaaaggtcta
acagccatccctgccaacttaccagaaaccatgacagagatacgtctggaactcaatggc
atcaagtccatcccccctggagccttctcatcatacaagaaactacgtaggatagacctc
agcaacaatcagatttcagaaattgcacctgatgccttccaaggtcttcgttcactcaac
tctctagtcttatatgggaacaagatcacagagttgcccaaaggagtatttgggggtctc
tatgcactacaactactgctactgaatgccaacaagattaactgcattcgagcagatgcc
tttgctgacctgcagaacctctcactgctctctctttatgacaacaagatccagaccctg
gccaaaggcacttttgccaccctgcgtgccatccagacactccatctggcccagaacccc
tttatttgcgactgcaacctgaagtggctggcagacttcttgcgtgccaatcctattgag
acaagtggtgctcgttgtgccagtccccgacgtttggccaacaagcgcattggacagatc
aagagcaagaaattccgctgttcccccaaggaacaatacttcattccaggtacggagaat
tatcatttgaacagtgaatgccatagtgatgtggtttgcccagccaagtgtcgttgtgaa
gccaatgtggtggagtgttccaatctgaggctgacaaagatcccagagcgcctcccacag
gctactgctgaattacgcctgaataacaatgaaatcacggtggtggaggcaacaggtatc
ttcaagaaacttccacacttaaagaaaataaatttgagcaacaacaaagtctcagagatt
gaagatggggcctttgagggggcatcttcagtgagcgagttacattttactgctaaccag
ctagagtcagtgcgcagctccatgttccggggcttggatgggctacggacactgatgctg
aggaacaatcgcatcaactgtattcacaatgacagcttcactgggctgcgcaatgtgcgc
cttctctccttatatgacaatcagatcagcattatttcaccaggggcttttgatacattg
cagtcactctctactctgaacctactggctaaccccttcaattgcaattgccatctggcc
tggctgggtgattggcttcgcaagaggaagattgtgactgggaatccacgctgccacaat
ccagattttctgcgccaaatcccactgcaggatgttgccttccccgacttcaggtgtgag
gaaggtcaggaggagaccatctgtttcccacgttctcagtgcccccaggagtgcacctgc
ctagacacagtagttcgctgcagcaataagcacctgaaaagccttccaaaaggaataccc
aagaatgttactgagctctacttggatggcaaccaattcatccttattccaggacaactc
tccaccttccgttacttgcagctggtagacctgagcaacaataagatcagcttcctcagc
aacaattccttcaccaatatgagccaactgaccactttgatcctcagctacaatgcactg
cagtgtattccctcactagcctttgaaggtctgcattcactacggctgctgtctcttcat
ggaaatgatatctccacgctccctgaaggtatctttgctgatgttacctccctctctcat
ctagcaattggtgccaaccccctgcattgtgattgccacatacgctggctctcaagctgg
gtcaaaactggctacaaagaacctggcattgcccgttgtgctggtcctgcggatatggaa
ggcaaacttctgctcacaactccagctaagaaatttgaatgccaggggcctcccctaccc
accatccaggccaagtgtaacccctgtatctccaatccctgccaaaacaggggcagttgt
caaagagatcctctgggctcctatcactgtgtctgtcccagtggttataagggcaaacac
tgtcacctatctgttgatggctgctctgagagaccctgtgagaatggtgggacctgcttg
tctcaagaaggagatggagccagctttaaatgtacttgtgtggatggatttgaaggtcca
agatgtaatctgaagacaaatagttgcaacaacagttgcaagaatgggggtacatgtgtt
aatgggtccactaaccacacatgcttgtgcctacccttctatacagggacatattgtgag
cagtcggtggatgtatgttcccctgagctcagcccctgccagcataatgccatatgtaga
gtctctcttgatggacccaagtgtgaatgtatgcctggctatgtgggagataattgcagt
gtggactacaatgactgcctagaccaccaatgccagaacaatgccaagtgttttgatgaa
ccgaatggttattcctgcctttgtactggtggtttcagtggtcagctctgtgagatccca
cctcatggctcctttcagtccagtccctgtgagagagtggagtgccagaatgatgccaac
tgtgtggagttaggcaatcgtgccttatgccagtgccttcccggctttggagggctcaaa
tgcgagaagctactgagtgtcaattttgtggatagggatacatacctacaattcacggac
ttacagaattggcccactgccaatattactctgcaggtctccacagctgaagataatggg
attctcttgtataatggggacactgatcacatggcggtggagctttatcatggccatgtg
cgtgtcagttatgatccaggcagttaccctagctcagctctttatagtgcagagaccatc
aatgatggacagttccatacagtggaactggtaacatttgagcggatggtaaacctatct
atcgatggaggtgatcccatgaccatggatagctttggcaaggcccacactctgaattct
gaggctccactctatgtggggggcatgccagtggatgtgaattctgctgccttccgagtt
tggcaaatcttgaatggttccagcttccacggatgtatccgcaatttatatatcaacaat
gaattacaagactttactaagactcagatgaaaccaggagttgttcctggttgtgaacct
tgccgcaagctctattgcatgcatggcatttgccaacccaacactgctcatggaccaatt
tgttactgtgagtcaggctggactgggccccattgtgaccagcccattaccaacccttgc
cagggacacaagtgtgaacatggaatctgtatgcctcttgatgcactttcctatagttgc
cagtgccaagatggttacaaaggagccttgtgcaaccaagaagttgaactacgtaaccca
tgcaagagcttggagtgtgttcatggtcagtgccagatctcagatgcaggagaggcctat
tgtgaatgcaactcgggatttgatggggatctctgtgatcaagaatcagagtgtcgggga
gaggctgtgcgagatttccatcaagtccagcgaggttatgccatttgccagacgacacgc
ccagtctcctggatggattgccagggatcatgcccaggactaggctgctgtggaggactg
cgtcttaagcgcaagaaatatacctttgagtgcagtgatggctcatccttcgtggaggaa
gtggaaaaacctagcaaatgtggctgttcccattgcatgtag
DBGET
integrated database retrieval system
