Thamnophis sirtalis (common garter snake): 106553106
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Entry
106553106 CDS
T06107
Symbol
SMCR8
Name
(RefSeq) Smith-Magenis syndrome chromosomal region candidate gene 8 protein
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
106553106 (SMCR8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsr04131
]
106553106 (SMCR8)
Membrane trafficking [BR:
tsr04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
106553106 (SMCR8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCR8_C
Folliculin
Motif
Other DBs
NCBI-GeneID:
106553106
NCBI-ProteinID:
XP_013927018
UniProt:
A0A6I9YR50
LinkDB
All DBs
Position
Unknown
AA seq
930 aa
AA seq
DB search
MIGAPDVVAFAKEEAAAEEAAAAAAREPGLPEEYSVPLLPAPGRGAHPWSRRGGLGGGPG
GSPPPFPRDFLLVAEFSEQVGPQPLLTVPAVEAPGGFDLNYFALRIMSVDYQACAAGAAP
GGPYPRLRFARDSQVVLGDSKAGAFAYVHHLTLYDLEARGFVRPFCLAYVSADERKVMHL
FPELSAQFSGTSEGLKDGNRRAFARELEKKLHDLDYTRAVLHRETELQKHSLAKGCYSSR
AIEKANELASVEKAIIEHRDLLRQIQSYPPGRRKRASGPPCEPTGEDAQPESPVDDTLPP
PSAQGSSYTPKLIPAKSSKCFDKKLKTLQELCEEQSFSQTLDRLHRIEKMFRGDVCYLLI
NRISRALMKQQAFAGFLFEDVSLLDEEQQEKPFEVSPGQNLEPPNMASLESCPSPKILVD
LASYKSSVESVPIKMDPEVGDGQDPEVSHPVPYDNVELLDVDLKGSVSSGESIEVLGTEK
SATTSVHSESQSGLLQAPPSPPVVRDKAASNRTISGDSIEVLSTCPSEALIPDDFKASYP
SAINEDPYGGEEEEGFLFNRELNLDSTEEEVEGSPAPEAPAGDASCCIGKESPNFLEGQA
SVTPGHGDDDGVVSIPPQPYRPGDAGFQVNFTDCSHDGVLGGLLAYELDPHYLCDGREAR
KTSMDKCSDSVSYMSSAASTNSDRTPSPAALAGEKSKKAGQSALRFIRQYPFAQPAIYSL
LSGRTLVVLGEDKATVEKLITALSIFIPNSGAYAKPVKHWATSPLQITDFQKWKLVGLQR
STSPGGPNMMHSLSRYSRYISVLDADYKTLRCPQYRGHLILRLADHRTQIKRGSTYHVHV
QALLTQLCSKAFLYAFCHHLHLPIREGETEDSVTARRENFLKVQLGLANEDRRVVQYLAE
LLKLQYIQDPIRGVCPVLRFDYLPSSLYKI
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgatcggagcgcccgacgtggtggccttcgccaaggaggaggcggcggctgaggaggca
gcggcggcggcggcacgcgagccgggcttgcccgaggagtactcggtgccgctgctgccc
gcgccaggccgcggcgcccacccgtggtcccggcgaggcggcttggggggcggcccgggg
ggctccccgccgccgttcccgcgcgacttcctgctggtagccgagttctcggagcaggtg
ggcccgcagccgctgctgacggtgccggcagtggaggctccgggcggcttcgacctgaac
tacttcgcgctgcgcatcatgtcggtggactaccaggcctgcgcggcgggggcggccccc
ggaggcccctacccgcgcctgcgcttcgcccgggactcccaggtggtgctgggcgactcc
aaggccggagccttcgcctacgtgcaccacctgacgctctacgacctggaggcacgtggc
ttcgtgcggcccttctgcctggcctacgtgtcggccgacgagcgcaaggtcatgcacctc
ttcccggagctctcggcccagttctcgggcacctcggaggggctgaaggacggcaaccgc
agggccttcgcccgcgagctggagaagaagctgcacgacctggactacacccgggctgtg
ctgcaccgtgagaccgagctgcagaagcacagcctggccaaagggtgctactccagccgg
gccatcgagaaggccaacgagctggccagcgtggagaaggccatcatcgagcaccgtgac
ctcctgcggcagatccagtcctatccacccggacggcggaagcgggccagtgggcctccc
tgcgagccgaccggagaggatgcccagccggagtcaccagttgatgatacgttgcccccg
ccctctgcccagggctcctcctacaccccgaagctcatcccagccaagtccagcaaatgc
ttcgacaagaagctgaaaaccctccaggagctctgtgaggagcagtccttcagccagacc
ctcgaccggttgcaccgcatcgagaagatgttccggggcgacgtctgctacctcctgatc
aaccgcatcagcagagccctcatgaagcagcaggcgttcgccggcttccttttcgaagac
gtgtctctcctggacgaggagcagcaggaaaagccctttgaagtcagtcccgggcagaat
ctggagccacccaacatggcttctttggaaagctgcccgagtcctaagatactcgtcgat
cttgcctcttacaaatctagtgtggagtctgtgccgattaagatggatccagaagtcgga
gacggccaagacccagaggtctcccaccccgtcccttatgacaacgtcgaacttctagat
gtcgacctgaaagggagcgtcagcagcggcgaaagcattgaagttttgggaacggagaaa
tcggccacaacttccgtccactctgaaagtcagtctggcttgctacaagcgccccccagc
ccccccgtggtgagggacaaagccgccagcaacaggaccataagcggggacagcatcgaa
gtcctcagtacctgcccctcggaggccctgatcccagacgattttaaagcaagctaccca
agtgccattaacgaagatccttacggtggcgaagaagaggaaggcttcctgttcaaccgc
gaattaaatctggacagcaccgaagaggaagtggaaggcagccctgcgcctgaagctcct
gcgggggatgcttcttgctgcattggcaaagagagccccaacttccttgagggtcaagcc
agtgtgactcccggacacggtgatgacgacggcgtggtcagcatccccccacagccatac
agaccgggtgacgcggggtttcaggtgaacttcacagactgctcccacgatggggtcctg
ggaggcctccttgcctatgaactcgacccccattacctctgtgacggccgagaagccaga
aaaacgagcatggataagtgctcggattccgtgagttacatgagcagcgcggcgtccacc
aactccgaccggaccccgtcccctgctgctctcgcgggagaaaagtccaagaaggccggg
cagagcgccttgcgcttcatccggcagtaccccttcgcccagcccgctatctactctctg
ctgagcgggaggaccctggtggtgctgggagaagacaaggccaccgtggagaagctcatc
accgccctctccattttcatccccaattccggagcctacgccaagcccgtgaagcactgg
gccacctcgcctttgcagatcacggacttccagaagtggaagctggtggggctccaaagg
tcaacctctccaggtggccccaacatgatgcattctctcagccggtacagccgatacatc
agcgtgctggacgccgactacaagaccctccgctgtccgcagtaccgggggcacctgatc
ctccggctggccgaccaccgcacccagatcaagcgggggagcacctaccacgtgcacgtc
caggccctcctcacccagctctgctccaaggccttcctctacgctttctgccatcacctg
cacctccccatccgggagggagagacggaggactctgtcaccgcgcggcgggagaacttc
ttgaaagtccagctgggtctggcaaacgaggaccgcagagtggtccagtatctggccgag
cttctgaaattgcagtacattcaggatcccatccgcggggtttgccccgtgctcaggttc
gattacctgcccagctctttgtacaaaatttag
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